Phyre 2 alignment of P52697 with c3frxB

Job Description P52697
Confidence 99.76% Date Thu Jan 5 12:06:01 GMT 2012

Rank 44 Aligned Residues 277

% Identity 11% Template c3frxB_

PDB info PDB header:signaling protein Chain: B: PDB Molecule:guanine nucleotide-binding protein subunit beta- PDBTitle: crystal structure of the yeast orthologue of rack1, asc1.

Resolution 2.13 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	.	.	.	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S
Query Conservation																									.	.	.
Alig confidence																									.	.	.																										.																		.	.	.	.
Template Conservation																																																					.																		.	.	.	.
Template Sequence	Q	P	N	L	L	L	S	A	S	R	D	K	T	L	I	S	W	K	L	T	G	D	D	Q	K	F	G	V	P	V	R	S	F	K	G	H	S	H	I	V	Q	D	C	T	L	T	A	D	G	A	Y	A	.	L	S	A	S	W	D	K	T	L	R	L	W	D	V	A	T	G	.	.	.	.	E	T	Y	Q	R	F
Template Known Secondary structure		T	T							T	T	S											T	T													S	S									T	T	S	S			.					T	T	S							T	T	T	T	.	.	.	.
Template Predicted Secondary structure																																																					.																		.	.	.	.
Template SS confidence
	29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.					.	.	100	.	.	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D
Query Conservation
Alig confidence																																				.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence	V	G	H	K	S	D	V	X	S	V	D	I	D	K	K	A	S	X	I	I	S	G	S	R	D	K	T	I	K	V	W	T	I	K	G	.	.	.	.	Q	C	L	A	T	L	L	G	H	N	D	W	V	S	Q	V	R	V	V	P	N	S	V	T	I	I	S	A	G	N	D	K	X	V	K	A	W	N	L	N	Q
Template Known Secondary structure				S	S									T	T	S								T	T	S							T	T	S	.	.	.	.										S	S																			T	T	S							T	T	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	F	Q	I	E	A	D	F	I	G	H	N	S	N	I	N	T	.	.	.	.	.	.	.	L	T	A	S	P	D	G	T	L	I	A	S	A	G	K	D	G	E	I	X	L	W	N	L	A	A	K	K	A	X	Y	T	L	S	A	Q	D	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	L	A	F
Template Known Secondary structure	T											S					.	.	.	.	.	.	.					T	T	S	S							T	T								T	T	T	T										S			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240														.	.	.	.	.

	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.						270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.
Query SS confidence																																.	.	.	.	.
Query Sequence	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	.	.	.	.	.	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q
Query Conservation																																.	.	.	.	.
Alig confidence																																.	.	.	.	.																											.
Template Conservation																																																															.
Template Sequence	S	P	N	R	Y	W	L	A	A	A	T	A	T	G	I	K	V	F	S	L	D	P	Q	Y	L	V	D	D	L	R	P	E	F	A	G	Y	S	K	A	A	E	P	H	A	V	S	L	A	W	S	A	D	G	Q	T	L	F	A	G	Y	T	D	.	N	V	I	R	V	W	Q	V	X	T	A	N
Template Known Secondary structure		S	S	S	S							T	T								T	T												T	T			T	T	T											T	T	S	S							T	T	.	S
Template Predicted Secondary structure																																																															.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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