Job Description P52697 Confidence 99.46% Date Thu Jan 5 12:06:01 GMT 2012 Rank 101 Aligned Residues 288 % Identity 8% Template c3fhcA_ PDB info PDB header:transport protein/hydrolase Chain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214 Resolution 2.80 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.																.	.	.	.	.	.
Query SS confidence																																															.	.	.																.	.	.	.	.	.
Query Sequence		I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	.	.	.	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	.	.	.	.	.	.	P	D	D	G	A	L	T	F	A	A	E
Query Conservation																																															.	.	.																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																										.	.	.																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		Q	N	K	P	G	D	D	P	N	K	I	V	D	K	.	.	.	.	.	.	V	Q	G	L	L	V	P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	Q	K	R	P	F	A	Y	H	K	L	L
Template Known Secondary structure					T	T			T	T						.	.	.	.	.	.									S	S									T	T	S										T	T	T									G	G	G	G	G	S							S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S
Query Conservation
Alig confidence																																													.	.	.
Template Conservation																																													.	.	.
Template Sequence		K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	G	S	I	A	V	L	Q	V	T	E	T	V	K	V	C	A	T	.	.	.	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	Q	L	A	V	G	K	Q	N	G	T	V	V	Q	Y	L	P	T
Template Known Secondary structure		S	S	G	G	G									S	S		T	T							T	T	S								S	S	S							.	.	.			G	G	G									T	T	S	S	S						T	T	S							T	T
Template Predicted Secondary structure																																													.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																													.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.
Query Sequence		D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	.	.	.	.	.	.	.	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W
Query Conservation																																													.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R	V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	M	A	L	L	P	K	K	E	E	K	H	P	E	I	F	V	N	F	M	E	P	C	Y	G	S	C	T	E	R	Q
Template Known Secondary structure												T	T	S		T	T	S												T	T									T	T			S	S	S											S	S		T	T											S	S		B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		231	.	.	.	.															.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	D	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																													.
Template Sequence		H	H	Y	Y	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A	S	T	E	V	S	I	L	.	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	A	E	L	P	V	T	D	K	S	D	D	S	L	P	M	G	V	V	V	D	Y	T	N	A	P	V	L	M	L	L	S	T	D
Template Known Secondary structure										T	T	T	T							T	T	B	S	B					.				T	T	S	S									G	G	G			B			B		T	T	S		B																					T	T
Template Predicted Secondary structure																													.
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		297	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	I	S	V	Y	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	V	L	C	P	F	Y	M
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions