Job Description P52697 Confidence 99.74% Date Thu Jan 5 12:06:01 GMT 2012 Rank 50 Aligned Residues 284 % Identity 12% Template c3ei4D_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex Resolution 3.30 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P
Query Conservation
Alig confidence																																																																.	.
Template Conservation																																																																.	.
Template Sequence		T	V	A	V	G	S	K	G	G	D	I	M	L	W	N	F	G	I	K	D	K	P	T	F	I	K	G	I	G	A	G	G	S	I	T	G	L	K	F	N	P	L	N	T	N	Q	F	Y	A	S	S	M	E	G	T	T	R	L	Q	D	F	K	.	.	G	N	I	L	R	V	F	A	S	S	D	T	I	N	I	W
Template Known Secondary structure								S	S	S							S	S	S		S									S	S	S								B		T	T		T	T							T	T	S							T	T	.	.	T										S	S	T	T
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A
Query Conservation
Alig confidence																												.	.	.																																														.	.	.	.
Template Conservation																												.	.	.																																														.	.	.	.
Template Sequence		F	C	S	L	D	V	S	A	S	S	R	M	V	V	T	G	D	N	V	G	N	V	I	L	L	N	.	.	.	M	D	G	K	E	L	W	N	L	R	M	H	K	K	K	V	T	H	V	A	L	N	P	C	C	D	W	F	L	A	T	A	S	V	D	Q	T	V	K	I	W	D	L	R	Q	.	.	.	.	V	R
Template Known Secondary structure									T	T	T	T							S	S	S							.	.	.	T	T			B							S	S	S									T	T	S	T	T							T	T	S							T	T	T	.	.	.	.
Template Predicted Secondary structure																												.	.	.																																														.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y
Query Conservation
Alig confidence																																																					.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		G	K	A	S	F	L	Y	S	L	P	H	R	H	P	V	N	A	A	C	F	S	P	D	G	A	R	L	L	T	T	D	Q	K	S	E	I	R	V	Y	S	A	S	Q	W	D	C	P	L	G	L	I	.	.	.	.	P	H	P	H	R	H	F	Q	H	L	T	P	I	K	A	A	W	H	P	R	Y	N	L	I	V
Template Known Secondary structure		S	S	S			S						S	S									T	T	S	S							S	S	S							T	T		S	S	S		S				.	.	.	.								T	T	S									S	S	S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		245	.	.												.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence		A	C	D	.	.	.	.	.	.	.	.	.	.	.	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	.	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																					.	.												.														.	.
Template Conservation																																				.	.																										.	.
Template Sequence		V	G	R	Y	P	D	P	N	F	K	S	C	T	P	Y	E	L	R	T	I	D	V	F	D	G	N	S	G	K	M	M	C	Q	L	.	.	Y	D	P	E	S	S	G	I	S	S	L	N	E	F	N	P	M	G	D	T	L	A	S	A	M	.	.	G	Y	H	I	L	I	W	S	Q	E
Template Known Secondary structure								T	T	S			S	S	S				S							S	S	S								.	.			T	T	T		S									S	S	S	S	S						.	.	T	T
Template Predicted Secondary structure																																				.	.																										.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.			.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions