Job Description P52697 Confidence 99.77% Date Thu Jan 5 12:06:01 GMT 2012 Rank 43 Aligned Residues 292 % Identity 8% Template c3ei3B_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P
Query Conservation
Alig confidence																																																																			.	.
Template Conservation																																																																			.	.
Template Sequence		H	P	T	T	V	A	V	G	S	K	G	G	D	I	I	L	W	D	Y	D	V	Q	N	K	T	S	F	I	Q	G	M	G	P	G	D	A	I	T	G	M	K	F	N	Q	F	N	T	N	Q	L	F	V	S	S	I	R	G	A	T	T	L	R	D	F	S	.	.	G	S	V	I	Q	V	F	A	K	T	D	S	W
Template Known Secondary structure			T	T							B	T	S							T	T	S	T	T									S	T	T		B								T	T										T	T	T							T	T	.	.	S												S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H
Query Conservation
Alig confidence																															.	.	.
Template Conservation																															.	.	.
Template Sequence		D	Y	W	Y	C	C	V	D	V	S	V	S	R	Q	M	L	A	T	G	D	S	T	G	R	L	L	L	L	G	.	.	.	L	D	G	H	E	I	F	K	E	K	L	H	K	A	K	V	T	H	A	E	F	N	P	R	C	D	W	L	M	A	T	S	S	V	D	A	T	V	K	L	W	D	L	R	N	I	K	D
Template Known Secondary structure		S										T	T	T	T							T	T	S							.	.	.	T	T	S									S	S	S									S	S		T	T							T	T	S							G	G	G			S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.				.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	.	.	.	.	.	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I
Query Conservation																																																														.	.	.	.	.
Alig confidence		.	.	.																																																										.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	K	N	S	Y	I	A	E	M	P	H	E	K	P	V	N	A	A	Y	F	N	P	T	D	S	T	K	L	L	T	T	D	Q	R	N	E	I	R	V	Y	S	S	Y	D	W	S	K	P	D	Q	I	I	I	H	P	H	R	Q	F	Q	H	L	T	P	I	K	A	T	W	H	P	M	Y	D	L	I	V	A
Template Known Secondary structure		.	.	.	T	T									S	S									T	T	T	S								S	S	S							T	T	B	T	T	S		S							B				T	T	S									S	S	S	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V
Query Conservation
Alig confidence									.																														.																		.			.
Template Conservation									.																														.																		.			.
Template Sequence		G	R	Y	P	D	D	Q	.	L	L	L	N	D	K	R	T	I	D	I	Y	D	A	N	S	G	G	L	V	H	Q	L	R	D	P	N	A	A	.	G	I	I	S	L	N	K	F	S	P	T	G	D	V	L	A	S	.	G	M	.	G	F	N	I	L	I	W	N	R	E
Template Known Secondary structure				B			T	T	.	T		T	T										T	T	T									B	T	T	B		.	S									T	T	S	S					.			.	T	T
Template Predicted Secondary structure									.																														.																		.			.
Template SS confidence
		391	.	.	.	.	.	.		.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.		.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.		.	.		.	.	.	.	450	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions