Job Description P52697 Confidence 92.01% Date Thu Jan 5 12:06:01 GMT 2012 Rank 172 Aligned Residues 312 % Identity 8% Template c3ei1A_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex Resolution 2.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	.	.	.	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G
Query Conservation																																												.	.	.
Alig confidence																	.																											.	.	.
Template Conservation																	.
Template Sequence		Q	V	V	V	A	V	G	R	A	L	Y	Y	L	Q	I	.	H	P	Q	E	L	R	Q	I	S	H	T	E	M	E	H	E	V	A	C	L	D	I	T	P	L	G	G	L	S	P	L	C	A	I	G	L	W	T	D	I	S	A	R	I	L	K	L	P	S	F	E	L	L	H	K	E	M	L	G	G	E	I	I	P
Template Known Secondary structure								T	T								.		S	S											S	S																						T	T	T	T							T	T	T											S	S
Template Predicted Secondary structure																	.
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.		.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	I	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	G	A	L	F	Y	F	G	L	N	I	E	T	G	L	L	S	D	R	K	K	V	T	L	G	T	Q	P	T	V	L	R	T	F	R	S	L	S	T	T	N	V	F	A	C	S	D	R	P	T	V	I	Y	S	S	N	H	K	L	V	F
Template Known Secondary structure										T	T									T	T	S									T	T	T													S	S										T	T								S	S	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H
Query Conservation
Alig confidence														.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		S	N	V	N	L	K	E	V	N	Y	M	C	.	.	.	.	.	.	.	P	L	N	S	D	G	Y	P	D	S	L	A	L	A	N	N	S	T	L	T	I	G	T	I	D	E	I	Q	K	L	H	I	R	T	V	P	L	Y	E	S	P	R	K	I	C	Y	Q	E	V	S	Q	C	F	G	V	L	S	S	R	I	E
Template Known Secondary structure				B	S	S	S							.	.	.	.	.	.	.					S	S	S	T	T							S	S										S	S	S									S	S									G	G	G	T
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		669	670	.	.	.	.	.	.	.	.	.	680								.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.
		243	.	.	.	.	.	.	250	.	.	.																											.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.				.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		L	Y	A	C	D	R	T	A	S	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	.	.	.	V	D	H	S	G	K	Y	L	I	A	A	G
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		V	Q	D	T	S	G	G	T	T	A	L	R	P	S	A	S	T	Q	A	L	S	S	S	V	S	S	S	K	L	F	G	E	E	V	E	V	H	N	L	L	I	I	D	Q	H	T	F	E	V	L	H	A	H	Q	F	L	Q	N	E	Y	A	L	S	L	V	S	C	K	L	G	K	D	P	N	T	Y	F	I	V	G
Template Known Secondary structure					S	S	S	S				S	S			T	T	T	S		S																								T	T	T											T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		742	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.
												294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																							.	.
Template Sequence		T	A	M	V	Y	P	E	E	A	E	P	K	Q	G	R	I	V	V	F	Q	Y	.	.	S	D	G	K	L	Q	T	V	A	E	K	E	V	K	G	A	V	Y	S	M	V
Template Known Secondary structure							T	T		S	S												.	.		S	S											S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		833	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.			.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions