Job Description P52697 Confidence 99.23% Date Thu Jan 5 12:06:01 GMT 2012 Rank 121 Aligned Residues 286 % Identity 12% Template c3c5mC_ PDB info PDB header:lyase Chain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199 Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.
Query SS confidence																																										.	.	.	.	.
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	.	.	.	.	.	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A
Query Conservation																																										.	.	.	.	.
Alig confidence												.	.	.	.	.										.																.	.	.	.	.																																			.
Template Conservation												.	.	.	.	.										.																																																							.
Template Sequence		K	G	D	V	I	T	L	N	F	E	.	.	.	.	.	T	F	V	D	S	D	T	Q	V	.	K	V	T	R	L	T	P	T	D	I	I	C	H	R	N	Y	F	Y	Q	K	C	F	T	Q	D	G	K	K	L	L	F	A	G	D	F	D	G	N	R	N	Y	Y	L	L	N	L	E	T	Q	Q	A	V	Q	L	.
Template Known Secondary structure		T	T									.	.	.	.	.					T	T	T			.						S		T	T	S							T	T	S			B		T	T	S									T	T	S	S								T	T	T	T						.
Template Predicted Secondary structure												.	.	.	.	.										.																																																							.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.						.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																																																						.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	T	E	G	K	G	D	N	T	F	G	G	F	I	S	T	D	E	R	A	F	F	Y	V	K	N	E	L	N	L	X	K	V	D	L	E	T	L	E	E	Q	V	I	Y	T	V	D	E	E	W	K	G	Y	G	T	W	V	A	N	S	D	C	T	K	L	V	G	I	E	I	L	K	R	D	W	Q	P	L	T	S
Template Known Secondary structure		.			S	S		B		T	T	T					T	T	S	S							T	T	T							T	T	T											T	T											T	T	S	S									G	G	G						S
Template Predicted Secondary structure		.
Template SS confidence
			76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
													147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.																														.	.	.
Template Conservation																															.	.	.	.	.	.	.																														.	.	.
Template Sequence		W	E	K	F	A	E	F	Y	H	T	N	P	T	C	R	L	I	K	V	D	I	E	T	G	E	L	E	V	I	.	.	.	.	.	.	.	H	Q	D	T	A	W	L	G	H	P	I	Y	R	P	F	D	D	S	T	V	G	F	C	H	E	G	P	H	D	.	.	.	L	V	D	A	R	X	W	L	V	N	E	D
Template Known Secondary structure											T											T	T	T							.	.	.	.	.	.	.				S	S									T	T											S		S	S	.	.	.	S		S								T	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	.	.	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	N	V	R	K	I	K	E	H	A	E	G	E	S	C	T	H	E	F	W	I	P	D	G	S	A	X	A	Y	V	S	Y	F	K	G	Q	T	D	R	V	I	Y	K	A	N	P	E	T	L	E	N	E	E	V	X	V	X	P	P	C	S	H	L	X	S	N	F	D	G	S	L	X	V	G	D	G	C	D	A
Template Known Secondary structure		S						S	S				T	T										T	T	S	S									T	T	T										T	T	T											S								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
																																										279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	E	N	D	P	F	L	Y	V	L	N	T	K	A	K	S	A	Q	K	L	C	K	H	S	T	S	W	D	V	L	D	G	D	R	Q	I	T	H	P	H	P	S	F	T	P	N	D	D	G	V	L	F	T	S	D	F	E	G	V	P	A	I	Y	I	A	D
Template Known Secondary structure														T	T	T	T	B														B	T	T	B	S	S	T	T								T	T	S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions