Job Description P52697 Confidence 99.63% Date Thu Jan 5 12:06:01 GMT 2012 Rank 78 Aligned Residues 275 % Identity 8% Template c3bg1E_ PDB info PDB header:protein transport, hydrolase Chain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane Resolution 3.00 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L
Query Conservation
Alig confidence																	.
Template Conservation																	.
Template Sequence		D	M	I	H	D	A	Q	M	D	Y	Y	G	T	R	L	.	A	T	C	S	S	D	R	S	V	K	I	F	D	V	R	N	G	G	Q	I	L	I	A	D	L	R	G	H	E	G	P	V	W	Q	V	A	W	A	H	P	M	Y	G	N	I	L	A	S	C	S	Y	D	R	K	V	I	I	W	R	E	E	N	G	T
Template Known Secondary structure											G	G	G				.					T	T	T									T	T												S	S										G	G	G	S	S							T	T	S								S	S	S
Template Predicted Secondary structure																	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.
Query Sequence		P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	.	.	.	.	.	.	.	.	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E
Query Conservation																																																										.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	E	K	S	H	E	H	A	G	H	D	S	S	V	N	S	V	C	W	A	P	H	D	Y	G	L	I	L	A	C	G	S	S	D	G	A	I	S	L	L	T	Y	T	G	E	G	Q	W	E	V	K	K	I	N	N	A	H	T	I	G	C	N	A	V	S	W	A	P	A	V	V	P	P	S	G	Q	K	P	N	Y
Template Known Secondary structure												S	S										T	T	T		S							S	S	S									S	S	S							B	T	T	S	S	S	S		B														S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K
Query Conservation
Alig confidence																																														.	.	.	.
Template Conservation																																														.	.	.	.
Template Sequence		I	K	R	F	A	S	G	G	C	D	N	L	I	K	L	W	K	E	E	E	D	G	Q	W	K	E	E	Q	K	L	E	A	H	S	D	W	V	R	D	V	A	W	A	P	.	.	.	.	S	I	G	L	P	T	S	T	I	A	S	C	S	Q	D	G	R	V	F	I	W	T	C	D	D	A	S	S	N	T	W	S
Template Known Secondary structure				B					B	T	T	S	B								T	T	S									B			S	S										.	.	.	.		S	S		S									T	T											S	S	S
Template Predicted Secondary structure																																														.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		268	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		E	G	F	Q	P	.	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y
Query Conservation							.
Alig confidence							.																								.											.
Template Conservation																															.											.
Template Sequence		P	K	L	L	H	K	F	N	D	V	V	W	H	V	S	W	S	I	T	A	N	I	L	A	V	S	G	G	D	.	N	K	V	T	L	W	K	E	S	V	.	D	G	Q	W	V	C	I	S	D	V
Template Known Secondary structure									S	S									T	T	T								S	S	.	S									T	.	T	S
Template Predicted Secondary structure																															.											.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions