Phyre 2 alignment of P52697 with c3acpA

Job Description P52697
Confidence 99.69% Date Thu Jan 5 12:06:01 GMT 2012

Rank 65 Aligned Residues 278

% Identity 12% Template c3acpA_

PDB info PDB header:chaperone Chain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S
Query Conservation
Alig confidence																												.	.																			.
Template Conservation																												.	.																			.
Template Sequence	R	R	F	I	L	G	T	T	E	G	D	I	K	V	L	D	S	N	F	N	L	Q	R	E	I	D	Q	.	.	A	H	V	S	E	I	T	K	L	K	F	F	P	S	G	E	A	L	.	I	S	S	S	Q	D	M	Q	L	K	I	W	S	V	K	D	G	S	N	P	R	T	L	I	G	H	R	A	T	V	T	D
Template Known Secondary structure								T	T	S							T	T								T	T	.	.	S	S	S	S									T	T	S	S			.					T	T	S							T	T	T											S	S
Template Predicted Secondary structure																												.	.																			.
Template SS confidence
	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																						.	.	.	.	.	140	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	D	N	R	T	L	W
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.
Template Sequence	I	A	I	I	.	.	.	.	D	R	G	R	N	V	L	S	A	S	L	D	G	T	I	R	L	W	E	C	G	T	G	T	T	I	H	T	F	N	R	K	E	N	P	H	D	G	V	N	S	I	A	L	F	V	G	T	D	R	Q	L	H	E	I	S	T	S	K	K	N	N	L	E	F	G	T	Y	G	K	Y	V
Template Known Secondary structure					.	.	.	.	T	T	T	T							T	T	S							T	T	T	T									T	T		T	T	S										S					T	T	T	S	S	S					T	T		S	S		T	T
Template Predicted Secondary structure					.	.	.	.
Template SS confidence
	184	.	.	.					.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

	143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P
Query Conservation
Alig confidence																																	.	.	.	.	.																																								.	.	.	.
Template Conservation																																	.	.	.	.	.																																								.	.	.	.
Template Sequence	I	A	G	H	V	S	G	V	I	T	V	H	N	V	F	S	K	E	Q	T	I	Q	L	P	S	K	F	T	C	S	C	N	.	.	.	.	.	S	L	T	V	D	G	N	N	A	N	Y	I	Y	A	G	Y	E	N	G	M	L	A	Q	W	D	L	R	S	P	E	C	P	V	G	E	F	L	I	N	.	.	.	.
Template Known Secondary structure					T	T	S							T	T	T										T	T	S	S				.	.	.	.	.						S	S		T	T							T	T	S							T	T	S	T	T	S		S					S	S	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.																																								.	.	.	.
Template SS confidence
	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

	223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.							.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.														.	.	.
Query SS confidence																																																			.	.	.	.	.	.														.	.	.
Query Sequence	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	.	.	.	.	.	.	T	E	T	Q	P	R	G	F	N	V	D	H	S	.	.	.	G	K	Y	L	I	A	A	G
Query Conservation																																																			.	.	.	.	.	.														.	.	.
Alig confidence	.	.	.	.													.	.																																	.	.	.	.	.	.														.	.	.
Template Conservation	.	.	.	.													.	.
Template Sequence	.	.	.	.	E	G	T	P	I	N	N	V	Y	F	A	A	.	.	G	A	L	F	V	S	S	G	F	D	T	S	I	K	L	D	I	I	S	D	P	E	S	E	R	P	A	I	E	F	E	T	P	T	F	L	V	S	N	D	D	E	V	S	Q	F	C	Y	V	S	D	D	E	S	N	G	E	V	L	E	V	G
Template Known Secondary structure	.	.	.	.	T	T	S									T	.	.	T							T	T	T											S	S		S	S					T	T	S							S	S												S	S	S
Template Predicted Secondary structure	.	.	.	.													.	.
Template SS confidence
					331	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

	294	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	K	S	H	H	I	S	V	Y	E	I
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence	K	N	.	N	F	C	A	L	Y	N	L
Template Known Secondary structure	T	T	.	T
Template Predicted Secondary structure			.
Template SS confidence
	405	.		.	.	.	410	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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