Job Description P52697 Confidence 99.52% Date Thu Jan 5 12:06:01 GMT 2012 Rank 94 Aligned Residues 274 % Identity 11% Template c2zkqa_ PDB info PDB header:ribosomal protein/rna Chain: A: PDB Molecule:18s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	.	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		Q	M	T	L	R	G	T	L	K	G	H	G	W	V	T	Q	I	A	T	T	P	Q	F	P	D	M	I	L	S	A	S	R	D	K	T	I	I	M	W	K	L	T	R	D	E	T	N	Y	G	I	P	Q	R	A	L	R	G	H	S	H	F	V	S	D	V	V	I	S	S	D	G	Q	F	A	L	S	G	S	W	D
Template Known Secondary structure															B								S	S	T	T							T	T	S							S	S	S	S											S	S	S				S		S						T	T	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.	.
Query Sequence		G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	.	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.	.
Alig confidence																					.	.	.																																																					.	.	.	.	.	.
Template Conservation																					.	.	.
Template Sequence		G	T	L	R	L	W	D	L	T	T	G	T	T	T	R	R	F	V	G	.	.	.	H	T	K	D	V	L	S	V	A	F	S	S	D	N	R	Q	I	V	S	G	S	R	D	K	T	I	K	L	W	N	T	L	G	V	C	K	Y	T	V	Q	D	E	S	S	E	W	V	S	C	V	R	F	S	P	N	S	S	N
Template Known Secondary structure									S	S	S	S	S								.	.	.			S	S								S	S	S	S							T	T	T							T	T	T																				T	T		S	S	S
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
																					178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	I	V	S	C	G	W	D	K	L	V	K	V	W	N	L	A	N	C	K	L	K	T	N	H	I	G	H	T	G	Y	L	N	T	V	T	V	S	P	D	G	S	L	C	A	S	G	G	K	D	G	Q	A	M	L	W	D	L	N	E	G	K	H	L	Y	T	L	D	G	G	D	I	I	N	A	L	C	F	S
Template Known Secondary structure		S							T	T	S							T	T	T		S									S	S									T	T	S	S							T	T	S							T	T	T	T								S	S									T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	.	.	.	.	.	.	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E
Query Conservation																									.	.	.	.	.	.
Alig confidence							.																		.	.	.	.	.	.																																			.
Template Conservation							.																																																										.
Template Sequence		P	N	R	Y	W	.	L	C	A	A	T	G	P	S	I	K	I	W	D	L	E	G	K	I	I	V	D	E	L	K	Q	E	V	I	S	T	S	S	K	A	E	P	P	Q	C	T	S	L	A	W	S	A	D	G	Q	T	L	F	A	G	Y	T	D	.	N	L	V	R	V	W	Q
Template Known Secondary structure		T	S	S			.					S	S	S										S	S	S																	S	S									S	S	T	T							T	T	.	B
Template Predicted Secondary structure							.																																																										.
Template SS confidence
		243	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions