Job Description P52697 Confidence 99.34% Date Thu Jan 5 12:06:01 GMT 2012 Rank 112 Aligned Residues 272 % Identity 8% Template c2z2pA_ PDB info PDB header:lyase/antibiotic Chain: A: PDB Molecule:virginiamycin b lyase; PDBTitle: crystal structure of catalytically inactive h270a virginiamycin b2 lyase from staphylococcus aureus with quinupristin Resolution 2.80 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G
Query Conservation
Alig confidence																										.																				.	.	.																																	.
Template Conservation																										.																				.	.	.																																	.
Template Sequence		K	L	Q	E	L	N	L	T	N	Q	D	T	G	P	Y	G	I	T	V	S	D	K	G	K	.	V	W	I	T	Q	H	K	A	N	M	I	S	C	I	N	L	D	G	K	.	.	.	I	T	E	Y	E	L	P	N	K	G	A	K	V	M	C	L	T	I	S	S	D	G	E	V	W	F	T	E	N	A	A	N	.
Template Known Secondary structure									S			S										S	S	S		.						T	T	T	T							T	T	S		.	.	.							S	S	S											T	T	S							T	T	T	T	.
Template Predicted Secondary structure																										.																				.	.	.																																	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	K	I	G	R	I	T	K	K	G	I	I	K	E	Y	T	L	P	N	P	D	S	A	P	Y	G	I	T	E	G	P	N	G	D	I	W	F	T	E	M	N	G	N	R	I	G	R	I	T	D	D	G	K	I	R	E	Y	E	L	P	N	K	G	S	Y	P	S	F	I	T	L	G	S	D	N	A	L	W	F
Template Known Secondary structure		.	.							T	T	S								S	S	T	T										T	T	S							T	T	T	T							S	S			B						S	S	T	T										T	T	S	S
Template Predicted Secondary structure		.	.
Template SS confidence
				79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																.	.	.
Template Sequence		T	E	N	Q	N	N	A	I	G	R	I	T	E	S	G	D	I	T	E	F	K	I	P	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	P	V	G	I	T	K	G	N	D	D	A	.	L	W	F	V	E	I	I	G	N	K	I	G	R	I	T	.	.	.	T	S	G	E
Template Known Secondary structure				T	T	T	T							T	T									S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T	T	S	S	.						T	T	T	T							.	.	.	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																			.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210				.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V	V	N
Query Conservation
Alig confidence																									.																	.	.	.
Template Conservation																									.																	.	.	.
Template Sequence		I	T	E	F	K	I	P	T	P	N	A	R	P	H	A	I	T	A	G	A	G	I	D	.	L	W	F	T	E	W	G	A	N	K	I	G	R	L	T	S	.	.	.	N	N	I	I	E	E	Y	P	I	Q	I	K	S	A	E	P	A	G	I	C	F	D
Template Known Secondary structure								S	S	T	T										S	T	T		.						T	T	T	T							G	.	.	.	G	G									S	T	T
Template Predicted Secondary structure																									.																	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions