Job Description P52697 Confidence 31.76% Date Thu Jan 5 12:06:01 GMT 2012 Rank 192 Aligned Residues 274 % Identity 9% Template c2wozA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein PDBTitle: the novel beta-propeller of the btb-kelch protein krp12 provides the binding site for lasp-1 that is necessary for3 pseudopodia extension Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		M	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	.	.	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S
Query Conservation																																																															.	.
Alig confidence														.	.							.																												.													.	.
Template Conservation														.	.							.																												.
Template Sequence		V	K	D	L	I	L	L	V	N	D	T	A	.	.	A	V	A	Y	D	P	.	M	E	N	E	C	Y	L	T	A	L	A	E	Q	I	P	R	N	H	S	S	I	V	T	Q	Q	N	Q	.	V	Y	V	V	G	G	L	Y	V	P	L	Q	S	Y	F	F	Q	L	D	N	V	S	S	E	W	V	G	L	P	P	L
Template Known Secondary structure											S	S		.	.						T	.	T	T	T									T	T	S		S	S							S	S	S		.						S	S						B							T	T	T	T						S		B
Template Predicted Secondary structure														.	.							.																												.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	S	A	R	C	L	F	G	L	G	E	V	D	D	K	I	Y	V	V	A	G	K	D	L	Q	T	E	A	S	L	D	S	V	L	C	Y	D	P	V	A	A	K	W	S	E	V	K	N	L	P	I	K	V	Y	G	H	N	V	I	S	H	N	G	M	I	Y	C	L	G	G	K	T	D	D	K	K	C	T	N	R
Template Known Secondary structure		S	S		B		S							T	T									B	T	T	T												T	T	T	T									S	S				S							T	T										S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	I	Y	N	P	K	K	G	D	W	K	D	L	A	P	M	K	T	P	R	S	M	F	G	V	A	I	H	K	G	K	I	V	I	A	G	G	V	T	E	D	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							T	T	T	T									S	S			B	S							T	T										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.									.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.
Query Sequence		D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	.	.	.	.	.	.	.	.	H	I	S	V	Y	E	I	V	G	E	Q	G	L
Query Conservation																																																													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.													.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	S	V	E	A	F	D	L	K	T	N	K	W	E	V	M	T	E	F	P	Q	E	R	S	S	I	S	L	V	S	L	.	.	A	G	S	L	Y	A	I	G	G	F	A	M	I	Q	E	F	A	P	T	E	V	N	D	I	W	K	Y	E	D	D	K	K	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.									T	T	T										S	S			B	S							.	.	T	T								B			B				B			B									T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template SS confidence
															509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540			.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		311	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		L	H	E	K	G	R	Y	A	V	.	G	Q	G	P	M	W	V	V	V	N
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		W	A	G	M	L	K	E	I	R	Y	A	S	G	A	S	C	L	A	T	R
Template Known Secondary structure							S			G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions