Job Description P52697 Confidence 99.82% Date Thu Jan 5 12:06:01 GMT 2012 Rank 30 Aligned Residues 279 % Identity 10% Template c2w18A_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:partner and localizer of brca2; PDBTitle: crystal structure of the c-terminal wd40 domain of human2 palb2 Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.																			.
Query SS confidence																																		.																			.
Query Sequence		K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	.	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	.	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A
Query Conservation																																		.																			.
Alig confidence																																		.																			.
Template Conservation
Template Sequence		E	K	E	P	C	I	I	T	A	C	E	D	V	V	S	L	W	K	A	L	D	A	W	Q	W	E	K	L	Y	T	W	H	F	A	E	V	P	V	L	Q	I	V	P	V	P	D	V	Y	N	L	V	C	V	A	L	G	N	L	E	I	R	E	I	R	A	L	F	C	E	K	Q	V	L	L	K	S	G	N	I	K
Template Known Secondary structure												S	S								S	S	S	S	B											S	S									T	T			S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		878	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	.	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D
Query Conservation																																												.
Alig confidence				.	.	.	.	.																																				.
Template Conservation				.	.	.	.	.
Template Sequence		A	V	.	.	.	.	.	L	G	L	T	K	R	R	L	V	S	S	S	G	T	L	S	D	Q	Q	V	E	V	M	T	F	A	E	D	G	G	G	K	E	N	Q	F	L	M	P	P	E	E	T	I	L	T	F	A	E	V	Q	G	M	Q	E	A	L	L	G	T	T	I	M	N	N	I	V	I	W	N	L	K	T
Template Known Secondary structure				.	.	.	.	.				T	T	T							S	S	S	T	T										T	T	S												S	S										T	S	T	T							T	T	S							T	T	T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		968	.						970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P
Query Conservation
Alig confidence																		.	.	.	.	.	.											.																												.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.											.																												.	.	.	.	.	.	.
Template Sequence		G	Q	L	L	K	K	M	H	I	D	D	A	S	V	C	H	.	.	.	.	.	.	K	A	Y	S	E	M	G	L	L	F	.	I	V	L	S	P	V	F	Q	L	I	V	I	N	P	K	T	T	L	S	V	G	V	M	L	Y	C	L	.	.	.	.	.	.	.	P	P	G	Q	A	G	R	F	L	E	G	D	V
Template Known Secondary structure																		.	.	.	.	.	.						T	T				.														T	T	T	T											.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																		.	.	.	.	.	.											.																												.	.	.	.	.	.	.
Template SS confidence
		1043	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.							.	1060	.	.	.	.	.	.	.	.		.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.								.	.	.	.	1100	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V
Query Conservation
Alig confidence				.																														.	.	.	.																						.
Template Conservation				.																														.	.	.	.																						.
Template Sequence		K	D	.	H	C	A	A	A	I	L	T	S	G	T	I	A	I	W	D	L	L	L	G	Q	C	T	A	L	L	P	P	V	.	.	.	.	Q	H	W	S	F	V	K	W	S	G	T	D	S	H	L	L	A	G	Q	K	D	.	G	N	I	F	V	Y	H	Y	S
Template Known Secondary structure			T	.	T							T	T	S							T	T	T		S									.	.	.	.										S	S	S	S							T	T	.	S
Template Predicted Secondary structure				.																														.	.	.	.																						.
Template SS confidence
		1124	.		.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.					.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.		.	.	.	.	1180	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions