Job Description P52697 Confidence 99.68% Date Thu Jan 5 12:06:01 GMT 2012 Rank 67 Aligned Residues 301 % Identity 7% Template c2vduB_ PDB info PDB header:transferase Chain: B: PDB Molecule:trna (guanine-n(7)-)-methyltransferase- PDBTitle: structure of trm8-trm82, the yeast trna m7g methylation2 complex Resolution 2.40 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																											.	.	.	.
Query SS confidence																											.	.	.	.
Query Sequence		Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	.	.	.	.	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P
Query Conservation																											.	.	.	.
Alig confidence																											.	.	.	.
Template Conservation
Template Sequence		L	V	F	A	I	I	K	N	C	I	L	S	F	K	Y	Q	S	P	N	H	W	E	F	A	G	K	W	S	D	D	F	P	I	Y	S	Y	I	R	N	L	R	L	T	S	D	E	S	R	L	I	A	C	A	D	S	D	K	S	L	L	V	F	D	V	D	K	T	S	K	N	V	L	K	L	R	K	R	F	C	F
Template Known Secondary structure								T	T									T	T	T																									T	T	S	S							G	G	G	T									S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.																		.	.
Query SS confidence																																									.	.																		.	.
Query Sequence		G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	.	.	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	.	.	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S
Query Conservation																																									.	.																		.	.
Alig confidence																																									.	.																		.	.
Template Conservation
Template Sequence		S	K	R	P	N	A	I	S	I	A	E	D	D	T	T	V	I	I	A	D	K	F	G	D	V	Y	S	I	D	I	N	S	I	P	E	E	K	F	T	Q	E	P	I	L	G	H	V	S	M	L	T	D	V	H	L	I	K	D	S	D	G	H	Q	F	I	I	T	S	D	R	D	E	H	I	K	I	S	H	Y	P
Template Known Secondary structure		S	S									T	T	S	S							T	T	S							T	T	S				S	S						S				S	S											T	T	S									T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	.	.	.	.	.	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A
Query Conservation																																																											.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		Q	C	F	I	V	D	K	W	L	F	G	H	K	H	F	V	S	.	.	.	.	.	.	.	S	I	C	C	G	K	D	Y	L	L	L	S	A	G	G	D	D	K	I	F	A	W	D	W	K	T	G	K	N	L	S	T	F	D	Y	N	S	L	I	K	P	Y	L	N	D	Q	H	L	A	I	I	E	F	A	V	S
Template Known Secondary structure			T	T										S	S				.	.	.	.	.	.	.						S	T	T							S	S	S							T	T	T														G	G	G			T	T	S	B			B
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.								.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.						.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																.																																.	.	.	.	.
Query SS confidence																																.																																.	.	.	.	.
Query Sequence		D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	.	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	.	.	.	.	.	Q	K	S	H	H	I	S	V	Y	E	I	V	G
Query Conservation																																.																																.	.	.	.	.
Alig confidence																																.																																.	.	.	.	.
Template Conservation
Template Sequence		K	I	I	K	S	K	N	L	P	F	V	A	F	F	V	E	A	T	K	C	I	I	I	L	E	M	S	E	K	Q	K	G	D	L	A	L	K	Q	I	I	T	F	P	Y	N	V	I	S	L	S	A	H	N	D	E	F	Q	V	T	L	D	N	K	E	S	S	G	V	Q	K	N	F	A	K	F	I	E	Y	N	L
Template Known Secondary structure							S	S	S	S							T	T		S									S	S	S	T	T											S	S									T	T									T	T			S	S				S								T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		307	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	G	L	L	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	N	S	F	V	V
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions