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Job DescriptionP52697
Confidence99.72%DateThu Jan 5 12:06:01 GMT 2012
Rank52Aligned Residues270
% Identity9%Templatec2pm7B_
PDB info PDB header:protein transportChain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the2 copii vesicular coat, selenomethionine version
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60.........70.........80.........90.........100.........110..
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Query Sequence  DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLE
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Template Sequence  AHNEXIHDAVXDYYGKRX. ATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEE
Template Known Secondary structure  S
SS

TTSS.TTS
B
SS
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   7..10.........20.... .....30.........40.........50.........60.........70.........80.....
 
   113......120.........130........ .140.........150.........160.........170.........180.........190.
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Query Sequence  DGLPVGVVDVVEGLDGCHSANISPDN. RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY
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Template Sequence  NGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNS. . . . ASWAPATSRKF
Template Known Secondary structure  SS
B





SS


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   86...90.........100.........110.........120.........130.........140.........150 .........160.
 
   192.......200.........210.........220.........230.........240.........250.........260... ......
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Query Sequence  CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS. . VLSKEG
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Template Sequence  VTGGADNLVKIWKYNSDAQTYVLESTLEGHSD. . . . WVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLK
Template Known Secondary structure  TTS
TTTT


SS....




SSSTTS
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   174.....180.........190.........200..... ....210.........220.........230.........240.........
 
   270.........280.........290.........300.........310...
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Query Sequence  FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHE
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Template Sequence  EEKFPDVLWRASWSLSGNVLALSGGD. NKVTLWKENLE. GKWEP
Template Known Secondary structure  SS

SS

SSS

TT.S

TT.S
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   250.........260.........270..... ....280...... ...290.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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