Job Description P52697 Confidence 99.70% Date Thu Jan 5 12:06:01 GMT 2012 Rank 61 Aligned Residues 290 % Identity 9% Template c2ovqB_ PDB info PDB header:transcription/cell cycle Chain: B: PDB Molecule:f-box/wd repeat protein 7; PDBTitle: structure of the skp1-fbw7-cyclinedegc complex Resolution 2.60 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P
Query Conservation
Alig confidence																												.	.												.	.						.
Template Conservation																												.	.												.	.						.
Template Sequence		R	I	V	S	G	S	D	D	N	T	L	K	V	W	S	A	V	T	G	K	C	L	R	T	L	V	.	.	G	H	T	G	G	V	W	S	S	Q	M	.	.	R	D	N	I	I	.	I	S	G	S	T	D	R	T	L	K	V	W	N	A	E	T	G	E	C	I	H	T	L	Y	G	H	T	S	T	V	R	C	M
Template Known Secondary structure								T	T	S							T	T	T									.	.			S	S								.	.		T	T			.					T	T	S							T	T	T											S	S
Template Predicted Secondary structure																												.	.												.	.						.
Template SS confidence
		2393	.	.	.	.	.	.	2400	.	.	.	.	.	.	.	.	.	2410	.	.	.	.	.	.	.	.			.	2420	.	.	.	.	.	.	.	.	.			2430	.	.	.	.		.	.	.	.	.	2440	.	.	.	.	.	.	.	.	.	2450	.	.	.	.	.	.	.	.	.	2460	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence		H	L	.	.	.	.	.	H	E	K	R	V	V	S	G	S	R	D	A	T	L	R	V	W	D	I	E	T	G	Q	C	L	H	V	L	M	G	H	V	A	A	V	R	C	V	Q	Y	D	G	R	R	V	V	S	G	A	Y	D	F	M	V	K	V	W	D	P	E	T	E	T	C	L	H	T	L	Q	G	H	T	N
Template Known Secondary structure				.	.	.	.	.		T	T							T	T	S							T	T	T											S	S									S	S							T	T	S							G	G	G	T										S	S
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
		2468	.						2470	.	.	.	.	.	.	.	.	.	2480	.	.	.	.	.	.	.	.	.	2490	.	.	.	.	.	.	.	.	.	2500	.	.	.	.	.	.	.	.	.	2510	.	.	.	.	.	.	.	.	.	2520	.	.	.	.	.	.	.	.	.	2530	.	.	.	.	.	.	.	.	.	2540	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																																															.	.	.
Template Conservation
Template Sequence		R	V	Y	S	L	Q	F	D	G	I	H	V	V	S	G	S	L	D	T	S	I	R	V	W	D	V	E	T	G	N	C	I	H	T	L	T	G	H	Q	S	L	T	S	G	M	E	L	K	D	N	I	L	V	S	G	N	A	D	S	T	V	K	I	W	D	I	K	T	G	Q	C	L	Q	T	L	Q	G	P	N	K
Template Known Secondary structure										S	S							T	T	S							T	T	T												S									T	T							T	T	S							T	T	T									S	T	T
Template Predicted Secondary structure
Template SS confidence
		2543	.	.	.	.	.	.	2550	.	.	.	.	.	.	.	.	.	2560	.	.	.	.	.	.	.	.	.	2570	.	.	.	.	.	.	.	.	.	2580	.	.	.	.	.	.	.	.	.	2590	.	.	.	.	.	.	.	.	.	2600	.	.	.	.	.	.	.	.	.	2610	.	.	.	.	.	.	.	.	.	2620	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.				.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																															.	.																						.	.	.
Query SS confidence																																															.	.																						.	.	.
Query Sequence		D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	.	.	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	.	.	.	G	Q	K	S	H	H	I	S	V
Query Conservation																																															.	.																						.	.	.
Alig confidence															.	.	.																														.	.																						.	.	.
Template Conservation															.	.	.
Template Sequence		H	Q	S	A	V	T	C	L	Q	F	N	K	N	.	.	.	F	V	I	T	S	S	D	D	G	T	V	K	L	W	D	L	K	T	G	E	F	I	R	N	L	V	T	L	E	S	G	G	S	G	G	V	V	W	R	I	R	A	S	N	T	K	L	V	C	A	V	G	S	R	N	G	T	E	E	T	K	L	L	V
Template Known Secondary structure			S	S									S	S	.	.	.							T	T	S							T	T	T											T	T	G	G	G	T										S	S									S	S	S	S	S
Template Predicted Secondary structure															.	.	.
Template SS confidence
		2623	.	.	.	.	.	.	2630	.	.	.	.	.				.	.	.	.	2640	.	.	.	.	.	.	.	.	.	2650	.	.	.	.	.	.	.	.	.	2660	.	.	.	.	.	.	.	.	.	2670	.	.	.	.	.	.	.	.	.	2680	.	.	.	.	.	.	.	.	.	2690	.	.	.	.	.	.	.	.	.
		302	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	I	V	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	F	D	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		2700	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions