Phyre 2 alignment of P52697 with c2oitA

Job Description P52697
Confidence 99.42% Date Thu Jan 5 12:06:01 GMT 2012

Rank 107 Aligned Residues 287

% Identity 10% Template c2oitA_

PDB info PDB header:oncoprotein Chain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human2 proto-oncogene nup214/can

Resolution 1.65 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.																	.	.	.	.	.	.	.	.
Query Sequence	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	.	.	.	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	.	.	.	.	.	.	.	.	P	D	D	G	A	L	T	F	A	A
Query Conservation																																												.	.	.																	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.																									.	.	.																	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence	N	K	P	G	D	D	P	N	K	I	V	D	K	.	.	.	.	.	.	V	Q	G	L	L	V	P	M	K	F	P	I	H	H	L	A	L	S	C	D	N	L	T	L	S	A	C	M	M	S	S	E	Y	G	S	I	I	A	F	F	D	V	R	T	F	S	N	E	A	K	Q	Q	K	R	P	F	A	Y	H	K	L
Template Known Secondary structure			T	T			T	T						.	.	.	.	.	.									S	S									T	T	S										T	T	T															T	T		S	S				S
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
	71	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V
Query Conservation
Alig confidence																																								.	.																							.
Template Conservation																																								.	.																							.
Template Sequence	L	K	D	A	G	G	M	V	I	D	M	K	W	N	P	T	V	P	S	M	V	A	V	C	L	A	D	G	S	I	A	V	L	Q	V	T	E	T	V	.	.	K	V	C	A	T	L	P	S	T	V	A	V	T	S	V	C	W	S	P	K	G	K	.	Q	L	A	V	G	K	Q	N	G	T	V	V	Q	Y	L	P
Template Known Secondary structure			S	G	G	G	S								S	S		T	T							T	T	S								S	S	S		.	.								G	G	G									T	T	S	S	.							T	T	S							T
Template Predicted Secondary structure																																								.	.																							.
Template SS confidence
	145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200									.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.
Query Sequence	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	.	.	.	.	.	.	.	.	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T
Query Conservation																																													.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	L	Q	E	K	K	V	I	P	C	P	P	F	Y	E	S	D	H	P	V	R	V	L	D	V	L	W	I	G	T	Y	V	F	A	I	V	Y	A	A	A	D	G	T	L	E	T	S	P	D	V	V	M	A	L	L	P	K	K	E	E	K	H	P	E	I	F	V	N	F	M	E	P	C	Y	G	S	C	T	E	R
Template Known Secondary structure	T											T	T			T	T	S												T	T									T	T			S	S	S												T	T	T												S	S					S	S	S
Template Predicted Secondary structure
Template SS confidence
	222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	229	230	.	.	.	.	.	.	.	.	.	240	.	.													.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Query Sequence	R	W	A	A	D	I	H	I	T	P	D	G	R	H	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	.	.	.	.	.	.	.	.	.
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	H	H	Y	Y	L	S	Y	I	E	E	W	D	L	V	L	A	A	S	A	A	S	T	E	V	S	I	L	A	R	Q	S	D	Q	I	N	W	E	S	W	L	L	E	D	S	S	R	A	E	L	P	V	T	D	K	S	D	D	S	L	P	M	G	V	V	V	D	Y	T	N	Q	V	E	I	T	I	S	D	E	K
Template Known Secondary structure										G	G	G	T							T	T		S	B								T	T	S	S									G	G	G			B			B		T	T	S		B																				T	T
Template Predicted Secondary structure
Template SS confidence
	302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

							288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I
Query Conservation	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.									.
Template Conservation															.
Template Sequence	T	L	P	P	A	P	V	L	M	L	L	S	T	D	.	G	V	L	C	P	F	Y	M
Template Known Secondary structure													T	T	.	S
Template Predicted Secondary structure															.
Template SS confidence
	382	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions