Phyre 2 alignment of P52697 with c2j04B

Job Description P52697
Confidence 99.77% Date Thu Jan 5 12:06:01 GMT 2012

Rank 42 Aligned Residues 286

% Identity 13% Template c2j04B_

PDB info PDB header:transcription Chain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic

Resolution 3.2 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																								.	.																									.	.	.	.	.																						.	.	.	.	.
Query SS confidence																								.	.																									.	.	.	.	.																						.	.	.	.	.
Query Sequence	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	.	.	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	.	.	.	.	.	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	.	.	.	.	.
Query Conservation																								.	.																									.	.	.	.	.																						.	.	.	.	.
Alig confidence																								.	.																									.	.	.	.	.																						.	.	.	.	.
Template Conservation
Template Sequence	Q	Y	L	A	V	A	V	S	Q	S	S	C	I	Q	I	F	K	M	N	T	S	T	L	H	C	V	K	V	Q	T	I	V	H	S	F	G	E	V	W	D	L	K	W	H	E	G	C	H	A	P	H	L	V	G	C	L	S	F	V	S	Q	E	G	T	I	N	F	L	E	I	I	D	N	A	T	D	V	H	V	F
Template Known Secondary structure																				T	T	T															S								S	S				S	S	S	S								T	T	S											S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

				71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure	.	.	.																																																					.
Query SS confidence	.	.	.																																																					.
Query Sequence	.	.	.	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	.	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L
Query Conservation	.	.	.																																																					.
Alig confidence	.	.	.																									.	.																											.
Template Conservation																												.	.
Template Sequence	K	M	C	E	K	P	S	L	T	L	S	L	A	D	S	L	I	T	T	F	D	F	L	S	P	T	T	.	.	V	V	C	G	F	K	N	G	F	V	A	E	F	D	L	T	D	P	E	V	P	S	F	Y	D	Q	V	H	D	S	Y	I	L	S	V	S	T	A	Y	S	D	F	E	D	T	V	V	S	T	V	A
Template Known Secondary structure					S		S						T	T	T								S	S	S	S		.	.						T	T	S							T	T	B		S	S		S						S	S	S											T	T	S
Template Predicted Secondary structure																												.	.
Template SS confidence
	409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.			.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.

	147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	D	G	Y	F	Y	I	F	N	P	K	D	I	A	T	T	K	T	T	V	S	R	F	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	L	V	P	V	V	Y	C	P	Q	I	Y	S	Y	I	Y	S	D	G	A	S	S	L	R	A	V	P	S	R	A	A	F	A	V	H	P	L	V	S
Template Known Secondary structure	T	T	S							G	G	G												S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S								T	T	T	T							S	S	S							T	T		T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.																.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																				.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Query Sequence	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	L	S	K	E	G	F	Q	.	.	.	P	T	E	T	Q	P	R	G	F	N	V	D	H
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Alig confidence																		.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																		.
Template Sequence	R	E	T	T	I	T	A	I	G	V	S	R	L	H	P	M	V	.	L	A	G	S	A	D	G	S	L	I	I	T	N	A	A	R	R	L	L	H	G	I	Q	K	S	L	R	L	W	K	W	D	Y	S	I	K	D	D	K	Y	R	I	D	S	S	Y	E	V	Y	P	H	G	I	N	I	T	C	T	K	W	N	E
Template Known Secondary structure		S	S									S	S			B		.					T	T	T						B	S		S	S	T	T	T												B			S	S	S																	S
Template Predicted Secondary structure																		.
Template SS confidence
	552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.		.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630

	285				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence	S	.	.	.	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E
Query Conservation		.	.	.
Alig confidence		.	.	.				.
Template Conservation								.
Template Sequence	T	S	A	G	G	K	C	.	Y	A	F	S	N	S	A	G	L	L	T	L	E	Y	L	S	L	E
Template Known Secondary structure	S	T	T	T	T	T		.						T	T	S								S
Template Predicted Secondary structure								.
Template SS confidence
	650	.	.	.	.	.	.		.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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