Job Description P52697 Confidence 99.08% Date Thu Jan 5 12:06:01 GMT 2012 Rank 130 Aligned Residues 282 % Identity 12% Template c2ismA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of the putative oxidoreductase (glucose2 dehydrogenase) (ttha0570) from thermus theromophilus hb8 Resolution 1.90 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.									.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.
Query Sequence		L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	.	.	.	.	.	.	.	.	F	V	F
Query Conservation																																																																							.	.	.	.	.	.	.	.
Alig confidence																									.							.																																							.	.	.	.	.	.	.	.
Template Conservation																									.							.
Template Sequence		L	R	V	E	E	V	V	G	G	L	E	V	P	W	A	L	A	F	L	P	D	G	G	.	M	L	I	A	E	R	.	P	G	R	I	R	L	F	R	E	G	R	L	S	T	Y	A	E	L	S	V	Y	H	R	G	E	S	G	L	L	G	L	A	L	H	P	R	F	P	Q	E	P	Y	V	Y	A	Y	R	T	V
Template Known Secondary structure												S									T	T	S		.						T	.	T	T							T	T													S	T	T		S								T	T	T	T	T	S
Template Predicted Secondary structure																									.							.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																																												.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.																																												.	.	.	.	.
Query Sequence		V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	.	.	.	.	.	.	.	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.																																												.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																																												.	.	.	.	.
Template Conservation
Template Sequence		A	E	G	G	L	R	N	Q	V	V	R	L	R	H	L	G	E	R	G	V	L	D	R	V	V	L	D	G	I	P	A	R	P	H	G	L	H	S	G	G	R	I	A	F	G	P	D	G	M	L	Y	V	T	T	G	E	V	Y	E	R	E	L	A	Q	D	L	A	S	L	G	G	K	I	L	R	L	T	P	E	G
Template Known Secondary structure			T	T	S	S											S	S																T	T												T	T	S									T	T		G	G	G	G	G		T	T		S	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
															166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																		.	.
Template Conservation
Template Sequence		E	P	A	P	G	N	P	F	L	G	R	R	G	A	R	P	E	V	Y	S	L	G	H	R	N	P	Q	G	L	A	W	H	P	K	T	G	E	L	F	S	S	E	H	G	P	G	H	D	E	V	N	L	I	V	P	G	G	N	Y	G	W	P	R	V	V	G	R	G	N	D	P	R	Y	R	D	P	L	Y	F	W
Template Known Secondary structure		S	B		T	T		T	T	T	T		T	T	S		T	T							S									T	T	T																				T	T		B			T	T	T			S					T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
							231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.	.	.	.																																									.	.	.
Query SS confidence		.	.	.	.	.																																									.	.	.
Query Sequence		.	.	.	.	.	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	.	.	.	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y
Query Conservation		.	.	.	.	.																																									.	.	.
Alig confidence		.	.	.	.	.											.	.																													.	.	.
Template Conservation																	.	.
Template Sequence		P	Q	G	F	P	P	G	N	L	A	F	F	R	G	D	.	.	L	Y	V	A	G	L	R	G	Q	A	L	L	R	L	V	L	E	G	E	R	G	R	W	R	V	L	R	V	E	T	A	L	S	G	F	G	R	L	R	E	V	Q	V	G	P	D	G	A	L	Y	V	T	T	S	N	R	D	G	R	G	Q	V	R
Template Known Secondary structure		T	T											T	T		.	.						T	T	T	T											T	T													S	S										T	T	S								S	T	T	T	T	S
Template Predicted Secondary structure																	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		303	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	V	G	E	Q	G	L	L	H	E	K
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	G	D	D	R	V	L	R	L
Template Known Secondary structure		.	.	.	T	T		S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					343	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions