Return to main results Retrieve Phyre Job Id

Job DescriptionP52697
Confidence97.13%DateThu Jan 5 12:06:01 GMT 2012
Rank158Aligned Residues276
% Identity11%Templatec2bklB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   38.40.........50......... 60.........70.........80.........90.........100...
Predicted Secondary structure 









....
















..........
Query SS confidence 





















. . . .











































. . . . . . . . . .
Query Sequence  VQPMVVSPDKRYLYVGVRPEFR. . . . VLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNA. . . . . . . . . .
Query Conservation 
  

 



  
 

   
  ....
 
                                         ..........
Alig confidence 





















....









...






























..........
Template Conservation 
     



  

      
 
   
 
 

 

 ...                

 

  
 
               
Template Sequence  LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE. . . WSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP
Template Known Secondary structure 
TTSSTT
S

TTT

...B
SS

BS

TT



TTSS



TTS
TTTGG
Template Predicted Secondary structure 














...























Template SS confidence 















































































   123......130.........140.........150........ .160.........170.........180.........190.........
 
   104.....110.........120.... .....130.........140.........150.........160.........170.........
Predicted Secondary structure  ..









..




























Query SS confidence  . .




















. .






















































Query Sequence  . . GNVSVTRLEDGLPVGVVDVVE. . GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR
Query Conservation  ..  
                  ..                          
                            
Alig confidence  ..




















..































.....

















Template Conservation      
    

       

               
 

  
 
             .....                  
Template Sequence  GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW. . . . . KRPGEKDFRLLVKGVGAK
Template Known Secondary structure  GG
TTS
GGG





TT

TTSS
TTT.....
TT
SS

SS

Template Predicted Secondary structure 

























.....











Template SS confidence 















































































   200.........210.........220.........230.........240.........250...... ...260.........270....
 
   180.........190.........200.........210.........220.........230.........240.........250.........
Predicted Secondary structure 
































Query SS confidence 















































































Query Sequence  HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS
Query Conservation                                                        
  
                      
Alig confidence 






























......










































Template Conservation               
        
        ......                
                          
Template Sequence  YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKP. . . . . . ARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVAT
Template Known Secondary structure  TT
TT
TT
BTTB
......SGGG



SS
TTTT
Template Predicted Secondary structure 

















......















Template SS confidence 















































































   275....280.........290.........300..... ....310.........320.........330.........340........
 
   260.........270.........280........ .290.........300.........310.........320........
Predicted Secondary structure 













.














Query SS confidence 




























.







































Query Sequence  EDGSVLSKEGFQPTETQPRGFNVDHSGKY. LIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVV
Query Conservation                      

 



  .
 

      
 
   
  

 
       

  
  
 
Alig confidence 













.













.







































Template Conservation                .                   

   
               
              
Template Sequence  LKGKPVRTVQLPGV. GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWAKVDVPMNPEQYQV
Template Known Secondary structure  TT




SSS.S


BS
TT
STTTTT




S

GGG
Template Predicted Secondary structure 







.



























Template SS confidence 





































































   349350.........360.. .......370.........380.........390.........400.........410.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions