Job Description P52697 Confidence 87.43% Date Thu Jan 5 12:06:01 GMT 2012 Rank 176 Aligned Residues 182 % Identity 12% Template c2b5nD_ PDB info PDB header:dna binding protein/protein binding Chain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain Resolution 2.80 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	D	Q	Q	T	F	F	C	G	N	V	A	H	Q	Q	L	I	Q	I	T	S	A	S	V	R	L	V	S	Q	E	P	K	A	L	V	S	E	W	K	E	P	Q	A	K	N	I	S	V	A	S	C	N	S	S	Q	V	V	V	A	V	G	R	A	L	Y	Y	L	Q	I	H	P	Q	E	L	R	Q	I	S	H
Template Known Secondary structure			S	S	S									T	T	T							T	T							T	T	T	T									T	T											S	S							T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		F	S	D	T	R	W	A	A	D	I	H	I	T	P	.	.	.	.	.	.	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																																										.
Template Conservation																																																																															.
Template Sequence		T	E	M	E	H	E	V	A	C	L	D	I	T	P	L	G	D	S	N	G	L	S	P	L	C	A	I	G	L	W	T	D	I	S	A	R	I	L	K	L	P	S	F	E	L	L	H	K	E	M	L	G	G	E	I	I	P	R	S	I	L	M	T	T	F	E	S	S	H	Y	L	L	C	A	L	G	D	.	G	A
Template Known Secondary structure					S	S											T	T			S			S							S	S	S		B						T	T	T	T							B			S	S												T	T									T	T	.	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		532	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G	P	M	W	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Y	F	G	L	N	I	E	T	G	L	L	S	D	R	K	K	V	T	L	G	T	Q	P	T	V	L	R
Template Known Secondary structure									T	T	T													S	S
Template Predicted Secondary structure
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions