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Job DescriptionP52697
Confidence87.43%DateThu Jan 5 12:06:01 GMT 2012
Rank176Aligned Residues182
% Identity12%Templatec2b5nD_
PDB info PDB header:dna binding protein/protein bindingChain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   145....150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN
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Template Sequence  VDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISH
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   452.......460.........470.........480.........490.........500.........510.........520.........530.
 
   225....230........ .240.........250.........260.........270.........280.........290........
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Query Sequence  FSDTRWAADIHITP. . . . . . DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHH
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Template Sequence  TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD. GA
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   532.......540.........550.........560.........570.........580.........590.........600........ .610
 
   299300.........310.........320.......
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Query Sequence  ISVYEIVGEQGLLHEKGRYAVGQGPMWVV
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Template Sequence  LFYFGLNIETGLLSDRKKVTLGTQPTVLR
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   611........620.........630.........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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