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Job DescriptionP52697
Confidence98.92%DateThu Jan 5 12:06:01 GMT 2012
Rank135Aligned Residues285
% Identity13%Templatec1z68A_
PDB info PDB header:lyaseChain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30 .........40.........50....... ..60.........70......
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Query Sequence  YIASPESQQIHVWNLNHEGALTLTQ. VVDVPGQVQPMVVSPDKRYLYVGVRPE. . . . . . . . FRVLAYRIAPDDGALTFAA
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Template Sequence  YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG. . . . EFVR
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   67..70.........80.........90.........100.........110.........120.........130........ .140..
 
   77..80.........90.........100.........110.........120...... ...130.........140
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Query Sequence  ESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL. . . . . . . . . . . . . . . . DGCHSANISPDNRT
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Template Sequence  GNELPRPIQYLCWSPVGSKLAYVY. . QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF
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   143......150.........160...... ...170.........180.........190.........200.........210.........220
 
   141........150.........160.........170.........180.........190.........200.........210.........220
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Query Sequence  LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDM
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Template Sequence  LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG. . . . . . . . . . . . . . . . . . AKNPVVRIFIIDTTYPAYVGPQEVPV
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   221........230.........240.........250...... ...260.........270.........280..
 
   221........230.........240... ......250.........260.........270.. .......280.......
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Query Sequence  MPENFSDTRWAADIHITPDGRHL. YACDRTASLITVFSVSEDGSVLSKEGFQP. . . . . . . . . . . . TETQPRGFNVDHSGK
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Template Sequence  PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI
Template Known Secondary structure 
TS
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   283......290.........300.........310.........320.........330.........340.........350.........360..
 
   288.290.........300.........310....
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Query Sequence  . YLIAAGQKSHHISVYEIVGEQGLLHEK
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Template Sequence  SYYKIFSDKDGYKHIHYIKDTVENAIQI
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   363......370.........380.........390
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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