Job Description P52697 Confidence 98.92% Date Thu Jan 5 12:06:01 GMT 2012 Rank 135 Aligned Residues 285 % Identity 13% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																											.																												.	.	.	.	.	.	.	.
Query SS confidence																											.																												.	.	.	.	.	.	.	.
Query Sequence		Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	.	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	.	.	.	.	.	.	.	.	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A
Query Conservation																											.																												.	.	.	.	.	.	.	.
Alig confidence																											.																												.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		Y	L	H	Q	S	A	D	N	N	I	V	L	Y	N	I	E	T	G	Q	S	Y	T	I	L	S	N	R	T	M	K	S	V	N	A	S	N	Y	G	L	S	P	D	R	Q	F	V	Y	L	E	S	D	Y	S	K	L	W	R	Y	S	Y	T	A	T	Y	Y	I	Y	D	L	S	N	G	.	.	.	.	E	F	V	R
Template Known Secondary structure							T	T	S							S	S	S														T	T	T		S						T	T	S	S												S	S	S											T	T	T	T	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	C	H	S	A	N	I	S	P	D	N	R	T
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		G	N	E	L	P	R	P	I	Q	Y	L	C	W	S	P	V	G	S	K	L	A	Y	V	Y	.	.	Q	N	N	I	Y	L	K	Q	R	P	G	D	P	P	F	Q	I	T	F	N	G	R	E	N	K	I	F	N	G	I	P	D	W	V	Y	E	E	E	M	L	A	T	K	Y	A	L	W	W	S	P	N	G	K	F
Template Known Secondary structure		S	S				S	S	B							S	S	T	T							.	.	T	T						S	S	T	T	S										B	T	T	T				S	S									T	T		S	S							T	T	S	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Y	A	E	F	N	D	T	D	I	P	V	I	A	Y	S	Y	Y	G	D	E	Q	Y	P	R	T	I	N	I	P	Y	P	K	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	N	P	V	V	R	I	F	I	I	D	T	T	Y	P	A	Y	V	G	P	Q	E	V	P	V
Template Known Secondary structure										T	T	S										S	S	S	S										B	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S												S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.													.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																									.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	.	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	.	.	.	.	.	.	.	.	.	.	.	.	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K
Query Conservation																									.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	M	I	A	S	S	D	Y	Y	F	S	W	L	T	W	V	T	D	E	R	V	C	L	Q	W	L	K	R	V	Q	N	V	S	V	L	S	I	C	D	F	R	E	D	W	Q	T	W	D	C	P	K	T	Q	E	H	I	E	E	S	R	T	G	W	A	G	G	F	F	V	S	T	P	V	F	S	Y	D	A	I
Template Known Secondary structure							T	S										S	S	S	S									S	S	T	T											S	S	S	S	S					G	G	G							S	S	S		S	S	S	S	S								T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
			288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		S	Y	Y	K	I	F	S	D	K	D	G	Y	K	H	I	H	Y	I	K	D	T	V	E	N	A	I	Q	I
Template Known Secondary structure										T	T	S								S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions