Phyre 2 alignment of P52697 with c1yiqA

Job Description P52697
Confidence 96.02% Date Thu Jan 5 12:06:01 GMT 2012

Rank 165 Aligned Residues 321

% Identity 12% Template c1yiqA_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:quinohemoprotein alcohol dehydrogenase; PDBTitle: molecular cloning and structural analysis of2 quinohemoprotein alcohol dehydrogenase adhiig from3 pseudomonas putida hk5. compariison to the other4 quinohemoprotein alcohol dehydrogenase adhiib found in the5 same microorganism.

Resolution 2.20 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																													.	.												.	.	.	.	.
Query SS confidence																																													.	.												.	.	.	.	.
Query Sequence	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	.	.	D	K	R	Y	L	Y	V	G	V	R	P	.	.	.	.	.	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F
Query Conservation																																													.	.												.	.	.	.	.
Alig confidence										.																																			.	.												.	.	.	.	.
Template Conservation										.
Template Sequence	K	G	K	V	Y	V	G	V	L	.	D	G	R	L	E	A	I	D	A	K	T	G	Q	R	A	W	S	V	D	T	R	A	D	H	K	R	S	Y	T	I	T	G	A	P	R	V	V	N	G	K	V	V	I	G	N	G	G	A	E	F	G	V	R	G	Y	V	T	A	Y	D	A	E	T	G	K	E	A	W	R	F
Template Known Secondary structure	T	T							T	.	T	S							T	T	T											S		T	T	S			B			S						T	T							B		T	T	T			B								T	T	T
Template Predicted Secondary structure										.
Template SS confidence
	121	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

	75	.	.	.																													.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																			.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	A	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	S	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	T	V	P	G	D	P	K	L	P	P	E	G	K	G	M	E	I	A	A	K	T	W	F	G	D	A	Y	V	E	Q	G	G	G	G	T	A	W	D	S	F	A	Y	D	P	E	L	N	L	L	Y	I	G	V	G	N	G	S	L	W	D	P	K	W	R	S	Q	A	K	G	D	N	L	F	L	S	S	I	V	A
Template Known Secondary structure		S	S				T	T	S				S								T	T			S	S	T												S						T	T	T	T											S	S							T	T		S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.										.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	.	.	.	.	.	.	.	.	.	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	V	N	A	D	T	G	E	Y	V	W	H	Y	Q	T	T	P	G	D	A	W	D	Y	T	A	T	Q	H	M	I	L	A	E	L	P	I	D	G	K	P	R	K	V	L	M	Q	A	P	K	N	G	F	F	Y	V	I	D	R	A	T	G	E	L	L	S	A	K	G	I	V	P	Q	S	W	T	K	G	M	D	M	K
Template Known Secondary structure			T	T	T									S	S	T	T			S						S										T	T											T	T	S							T	T	T									S	S			S	S						T	T
Template Predicted Secondary structure
Template SS confidence
	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

	180	.	.	.	.	.	.	.	.	.																							190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	H	M	V	F	H	P	N	E	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	G	R	P	I	L	D	E	E	N	A	A	Y	W	K	N	G	K	R	N	L	V	T	P	A	F	W	G	A	H	D	W	Q	P	M	S	Y	N	P	D	T	G	L	V	Y	I	P	A	H	I	M	S	A	Y	Y	E	H	I	P	E	A	P	K	R	N	P	F	K	S	M	Y	Q	L	G	L	R	T	G	M	M
Template Known Secondary structure	T	T											T	T	T	S	S	S					S	S		T	T		S	S		S	S						T	T	T	T																	S	S						S		T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.

	238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y
Query Conservation
Alig confidence																											.	.																															.							.	.						.	.
Template Conservation																											.	.																															.							.	.						.	.
Template Sequence	P	E	G	A	E	G	L	L	E	M	A	K	S	W	S	G	K	L	I	A	W	D	P	V	K	Q	.	.	Q	A	A	W	E	V	P	Y	V	T	I	F	N	G	G	T	L	S	T	A	G	N	L	V	F	E	G	S	A	D	.	G	R	V	I	A	Y	.	.	A	A	D	T	G	.	.	E	K	L	W	E	Q
Template Known Secondary structure		S	S									T	T										T	T	T	T	.	.									S	S	S									T	T	T							T	T	.	S						.	.		T	T	T		.	.
Template Predicted Secondary structure																											.	.																															.							.	.						.	.
Template SS confidence
	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.			.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.			.	.	.	.	.			.	.	.	510	.	.

	318	.	320	.	.					.	.	.									.	.	.	.	330
Predicted Secondary structure						.	.	.	.				.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.				.	.	.	.	.	.	.	.
Query Sequence	A	V	G	Q	G	.	.	.	.	P	M	W	.	.	.	.	.	.	.	.	V	V	V	N	A
Query Conservation						.	.	.	.				.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	P	A	A	S	G	V	M	A	A	P	V	T	Y	S	V	D	G	E	Q	Y	V	T	F	M	A
Template Known Secondary structure			S	S				S								T	T
Template Predicted Secondary structure
Template SS confidence
	513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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