Job Description P52697 Confidence 99.75% Date Thu Jan 5 12:06:01 GMT 2012 Rank 48 Aligned Residues 292 % Identity 11% Template c1r5mA_ PDB info PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 Resolution 1.55 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30							.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	.	.	.	.	.	.	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.																					.																		.	.	.	.	.
Template Conservation																																																						.																		.	.	.	.	.
Template Sequence		I	L	A	Y	G	E	K	N	S	V	A	R	L	A	R	I	V	E	T	Y	W	K	L	T	I	I	A	E	L	R	H	P	F	A	L	S	T	N	Q	V	T	C	L	A	W	S	H	D	G	N	S	I	.	V	T	G	V	E	N	G	E	L	R	L	W	N	K	T	G	A	.	.	.	.	.	L	L	N	V	L
Template Known Secondary structure								T	B	T																													B									T	T	S	S			.					T	T	S							T	T	S		.	.	.	.	.
Template Predicted Secondary structure																																																						.																		.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240						.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																					.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	S	P	D	N
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	H	R	A	P	I	V	S	V	K	W	N	K	D	G	T	H	I	I	S	M	D	V	E	N	V	T	I	L	W	N	V	I	S	G	T	V	M	Q	H	F	E	L	K	G	S	L	G	V	D	V	E	W	V	D	D	D	K	F	V	I	P	G	P	K	G	A	I	F	V	Y	Q	I	T	E	K	T	P	T
Template Known Secondary structure						S									T	T	S	S							T	T								T	T	T	T													B	S							T	T							G	G	G							T	T		S	S		S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	L	I	G	H	H	G	P	I	S	V	L	E	F	N	D	T	N	K	L	L	L	S	A	S	D	D	G	T	L	R	I	W	H	G	G	N	G	N	S	Q	N	C	F	Y	G	H	S	Q	S	I	V	S	A	S	W	V	G	D	D	K	V	I	S	C	S	M	D	G	S	V	R	L	W	S	L	K	Q	N
Template Known Secondary structure								S	S									T	T	T	T							T	T	S							S	S	S	B	S		S							S	S									T	T	T							T	T	S							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H	L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	.	.	.	.	.	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G
Query Conservation																																																						.	.	.	.	.
Alig confidence																											.																											.	.	.	.	.
Template Conservation																											.
Template Sequence		T	L	L	A	L	S	I	V	D	G	V	P	I	F	A	G	R	I	S	Q	D	G	Q	K	Y	.	A	V	A	F	M	D	G	Q	V	N	V	Y	D	L	K	K	L	N	S	P	L	P	I	P	L	Y	A	S	Y	Q	S	S	Q	D	N	D	Y	I	F	D	L	S	W	N	C	A	G	N	K	I	S	V	A	Y
Template Known Secondary structure										T	T										T	T	S	S			.					T	T	S																									T	T												T	T	S	S
Template Predicted Secondary structure																											.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		294	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	S	H	H	I	S	V	Y	E	I
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		S	L	.	Q	E	G	S	V	V	A	I
Template Known Secondary structure		S	S	.	S
Template Predicted Secondary structure				.
Template SS confidence
		526	.		.	.	530	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions