Job Description P52697 Confidence 98.47% Date Thu Jan 5 12:06:01 GMT 2012 Rank 148 Aligned Residues 219 % Identity 10% Template c1n7dA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor Resolution 3.70 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L
Query Conservation
Alig confidence																											.																																											.	.	.
Template Conservation																											.																																											.	.	.
Template Sequence		A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	D	R	A	H	G	.	S	S	Y	D	T	V	I	S	R	D	I	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G	T	V	S	V	A	D	T	K	G	V	.	.	.	K	R	K	T	L	F	R	E	Q
Template Known Secondary structure		T	T	T							T	T	T	T	S	B					S						.						B			S											S	S	S	B						T	T	T	S						B	S	S	S		.	.	.									S
Template Predicted Secondary structure																											.																																											.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.				.	.	.	.	.	.	.	490	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G
Query Conservation
Alig confidence																						.
Template Conservation																						.
Template Sequence		G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	.	W	G	T	P	A	K	I	K	K	G	G	L	N	G	V	D	I	Y	S	L	V	T	E	N	I	Q	W	P	N	G	I	T	L	D	L	L	S	G	R	L	Y	W	V	D	S	K	L	H	S	I	S	S	I	D	V	N	G	G	N
Template Known Secondary structure		S										S	S	S	S							.		S	S	S					B			S	S	S							S		S	S		S	S								T	T	T								T	T	T	T							S	S	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.		.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W
Query Conservation
Alig confidence																.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		R	K	T	I	L	E	D	E	K	R	L	A	H	P	.	.	.	.	.	.	F	S	L	A	V	F	E	D	K	V	F	W	T	D	I	I	N	E	A	I	F	S	A	N	R	L	T	G	S	D	V	N	L	L	A	E	N	L	L	S	P	E	D	M	V	L	F	H	Q	L
Template Known Secondary structure									S	S	S		S	S		.	.	.	.	.	.							T	T							S	T	T	T							T	T	T									T	T		S	S						B		S	S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.							.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions