Job Description P52697 Confidence 99.89% Date Thu Jan 5 12:06:01 GMT 2012 Rank 16 Aligned Residues 286 % Identity 19% Template c1l0qC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	V	Y	I	A	S	P	E	S	Q	Q	I	H	V	W	N	L	N	H	E	G	A	L	T	L	T	Q	V	V	D	V	P	G	Q	V	Q	P	M	V	V	S	P	D	K	R	Y	L	Y	V	G	V	R	P	E	F	R	V	L	A	Y	R	I	A	P	D	D	G	A	L	T	F	A	A	E	S	A	L	P	G
Query Conservation
Alig confidence																							.	.	.																																											.	.	.	.
Template Conservation																							.	.	.																																											.	.	.	.
Template Sequence		T	F	A	Y	I	A	N	S	E	S	D	N	I	S	V	I	D	V	T	S	N	.	.	.	K	V	T	A	T	I	P	V	G	S	N	P	X	G	A	V	I	S	P	D	G	T	K	V	Y	V	A	N	A	H	S	N	D	V	S	I	I	D	T	A	T	N	.	.	.	.	N	V	I	A	T	V	P	A	G	S
Template Known Secondary structure									G	G	G	T							T	T	T	T	.	.	.									S	S	S								T	T	S	S							T	T	T	T							T	T	T	T	.	.	.	.									S	S
Template Predicted Secondary structure																							.	.	.																																											.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.				.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	T	H	I	S	T	D	H	Q	G	Q	F	V	F	V	G	S	Y	N	A	G	N	V	S	V	T	R	L	E	D	G	L	P	V	G	V	V	D	V	V	E	G	L	D	G	C	H	S	A	N	I	S	P	D	N	R	T	L	W	V	P	A	L	K	Q	D	R	I	C	L	F	T	V	S	D	D	G	H	L
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		S	P	Q	G	V	A	V	S	P	D	G	K	Q	V	Y	V	T	N	X	A	S	S	T	L	S	V	I	D	T	T	S	N	T	V	A	G	T	V	K	T	.	.	.	G	K	S	P	L	G	L	A	L	S	P	D	G	K	K	L	Y	V	T	N	N	G	D	K	T	V	S	V	I	N	T	V	T	K	A	V	I
Template Known Secondary structure		S								T	T	S	S							T	T	T	T							T	T	T	T									.	.	.	S	S	S								T	T	S	S							T	T	T	T							T	T	T	T
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	Q	D	P	A	E	V	T	T	V	E	G	A	G	P	R	H	M	V	F	H	P	N	E	Q	Y	A	Y	C	V	N	E	L	N	S	S	V	D	V	W	E	L	K	D	P	H	G	N	I	E	C	V	Q	T	L	D	M	M	P	E	N	F	S	D	T	R	W	A	A	D	I	H	I	T	P	D	G	R	H
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	V	S	V	G	R	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	I	A	V	T	P	D	G	T	K	V	Y	V	A	N	F	D	S	X	S	I	S	V	I	D	T	V	T	N	S	V	I	D	T	V	K	V	E	A	A	P	S	G	I	A	V	N	P	E	G	T	K
Template Known Secondary structure								S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	S							T	T	T	T							T	T	T	T									S	S									T	T	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160																			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	A	C	D	R	T	A	S	L	I	T	V	F	S	V	S	E	D	G	S	V	L	S	K	E	G	F	Q	P	T	E	T	Q	P	R	G	F	N	V	D	H	S	G	K	Y	L	I	A	A	G	Q	K	S	H	H	I	S	V	Y	E	I	V	G	E	Q	G	L	L	H	E	K	G	R	Y	A	V	G	Q	G
Query Conservation
Alig confidence																							.	.																															.												.	.	.	.
Template Conservation																							.	.																															.												.	.	.	.
Template Sequence		A	Y	V	T	N	V	D	K	Y	F	N	T	V	S	X	I	D	T	G	T	N	.	.	K	I	T	A	R	I	P	V	G	P	D	P	A	G	I	A	V	T	P	D	G	K	K	V	Y	V	A	L	S	F	.	N	T	V	S	V	I	D	T	A	T	N	.	.	.	.	T	I	T	A	T	X	A	V	G	K	N
Template Known Secondary structure									S	S									T	T	T	T	.	.										S	S								T	T	S	S									.								T	T	T	T	.	.	.	.									S	S	S
Template Predicted Secondary structure																							.	.																															.												.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.					.	.	.	.	280	.	.	.	.	.	.
		323
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		288

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions