Job Description P24200 Confidence 13.76% Date Thu Jan 5 11:41:10 GMT 2012 Rank 55 Aligned Residues 61 % Identity 21% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.																	.	.
Query SS confidence																					.																	.	.
Query Sequence		K	G	I	C	E	N	C	G	K	N	A	P	F	Y	L	N	D	G	N	.	P	Y	L	E	V	H	H	V	I	P	L	S	S	G	G	A	.	.	D	T	T	D	N	C	V	A	L	C	P	N	C	H	R	E	L	H	Y	S	K	N	A	K	E	L	I	E	M	L
Query Conservation																					.																	.	.
Alig confidence												.	.								.						.	.										.	.
Template Conservation												.	.														.	.
Template Sequence		G	L	R	C	E	T	C	G	G	R	.	.	A	G	E	C	P	G	H	F	G	H	I	E	L	.	.	A	R	P	V	I	H	V	G	F	A	K	T	I	Y	R	I	L	E	S	T	C	R	E	C	G	R	I	K	L	T	D	E	E	I	E	E	Y	M	K	K	I
Template Known Secondary structure						S	S	S				.	.	S	S	S											.	.							G	G	G											S		S	T	T				S	S
Template Predicted Secondary structure												.	.														.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions