Job Description P24200 Confidence 27.31% Date Thu Jan 5 11:41:10 GMT 2012 Rank 20 Aligned Residues 49 % Identity 22% Template c1tvtA_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	V	S	K	L	I	K	K	T	L	S	Q	P	E	G	S	R	K	P	V	E	V	E	R	L	Q	K	V	Y	V	R	D	P	M	V	K	A	W	I	L	Q	Q	S	K	G	I	C	E	N	C	G	K	N	A	P	F	Y	L	N	D	G	N	P	Y	L	E	V
Query Conservation
Alig confidence																							.	.	.										.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Conservation																							.	.	.										.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Sequence		R	R	I	P	G	T	A	E	E	N	L	Q	K	S	S	G	G	V	P	G	Q	.	.	.	N	T	G	G	Q	E	A	R	P	.	.	.	.	.	.	.	.	.	.	.	N	Y	H	C	Q	L	C	.	.	.	.	.	F	L	R	S	L	G	I	D	Y	L	D	A
Template Known Secondary structure		S	S	T	T	S		T	T	T	S	S		S	S		S	S					.	.	.				S	S	S			S	.	.	.	.	.	.	.	.	.	.	.	S	T	T	T	T	T	T	.	.	.	.	.		S	S	S		S	S					S
Template Predicted Secondary structure																							.	.	.										.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.				.	.	.	.	.	30	.	.	.												.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions