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Job DescriptionP27830
Confidence98.82%DateThu Jan 5 11:44:08 GMT 2012
Rank189Aligned Residues237
% Identity9%Templatec2wdzD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:short-chain dehydrogenase/reductase; PDBTitle: crystal structure of the short chain dehydrogenase2 galactitol-dehydrogenase (gatdh) of rhodobacter3 sphaeroides in complex with nad+ and 1,2-pentandiol
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHL
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Template Sequence  ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSILVN
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TTTSTT
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  AAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYS
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Template Sequence  SAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSY. . . . . . . . MASK
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B
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   92.......100.........110.........120.........130.........140.........150......... 160...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  ASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYVEDHARALYCVA.
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Template Sequence  GAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCGE. . . . . . . . . PSEIAAAALFLAS
Template Known Secondary structure  TTT

BSSGGGTST
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   164.....170.........180.........190.........200.........210.........220. ........230....
 
   241........250.....
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Query Sequence  . TTGKVGETYNIGGHN
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Template Sequence  PAASYVTGAILAVDGG
Template Known Secondary structure  GGGTT

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   235....240.........250
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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