Job Description P27830 Confidence 100.00% Date Thu Jan 5 11:44:08 GMT 2012 Rank 31 Aligned Residues 294 % Identity 21% Template c2q1wC_ PDB info PDB header:sugar binding protein Chain: C: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase; PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmh in2 complex with nad+ Resolution 2.19 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	K	I	L	I	T	G	G	A	G	F	I	G	S	A	L	V	R	Y	I	I	N	E	T	S	D	A	V	V	V	V	D	K	L	T	Y	A	G	N	L	M	S	L	A	P	V	A	Q	S	E	R	F	A	F	E	K	V	D	I	C	D	R	A	E	L	A	R	V	F	T	E	H	Q	P	D	C	V	M	H
Query Conservation
Alig confidence																																									.	.	.	.	.
Template Conservation																																									.	.	.	.	.
Template Sequence		M	K	K	V	F	I	T	G	I	C	G	Q	I	G	S	H	I	A	E	L	L	L	E	R	G	D	K	V	V	G	I	D	N	F	A	T	G	R	R	.	.	.	.	.	E	H	L	K	D	H	P	N	L	T	F	V	E	G	S	I	A	D	H	A	L	V	N	Q	L	I	G	D	L	Q	P	D	A	V	V	H
Template Known Secondary structure									T	T	T	S													T	T										S	S			G	.	.	.	.	.	G	G	S				T	T								T	T															S
Template Predicted Secondary structure																																									.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	E	S	H	V	D	R	S	I	D	G	P	A	A	F	I	E	T	N	I	V	G	T	Y	T	L	L	E	A	A	R	A	Y	W	N	A	L	T	E	D	K	K	S	A	F	R	F	H	H	I	S	T	D	E	V	Y	G	D	L	H	S	T	D	D	F	F	T	E	T	T	P	Y	A	P	S	S	P	Y
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template Sequence		T	A	A	S	Y	K	D	P	.	.	.	.	.	.	.	.	.	.	.	.	D	D	W	Y	N	D	T	L	T	N	C	V	G	G	S	N	V	V	Q	A	A	K	K	N	N	V	G	R	F	V	Y	F	Q	T	A	L	C	Y	G	V	K	P	I	Q	Q	P	V	R	L	.	.	.	.	D	H	P	R	N	P	A
Template Known Secondary structure							S		T	.	.	.	.	.	.	.	.	.	.	.	.	T										T													T	T		S								G	G	G	G		S	S		S	S	S	S	B		T	.	.	.	.	T						T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.													.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	S	K	A	S	S	D	H	L	V	R	A	W	L	R	T	Y	G	L	P	T	L	I	T	N	C	S	N	N	Y	G	P	Y	H	F	P	E	K	L	I	P	L	M	I	L	N	A	L	A	G	K	S	L	P	V	Y	G	N	G	Q	Q	I	R	D	W	L	Y	V	E	D	H	A	R	A	L	Y	C	V	A
Query Conservation
Alig confidence																																						.	.																				.	.	.
Template Conservation																																						.	.																				.	.	.
Template Sequence		N	S	S	Y	A	I	S	K	S	A	N	E	D	Y	L	E	Y	S	G	L	D	F	V	T	F	R	L	A	N	V	V	G	P	R	N	S	.	.	G	P	L	P	I	F	F	Q	R	L	S	E	G	K	K	C	F	V	T	.	.	.	K	A	R	R	D	F	V	F	V	K	D	L	A	R	A	T	V	R	A	V
Template Known Secondary structure		T																											S				S	T	T			.	.												T	T							.	.	.	S
Template Predicted Secondary structure																																						.	.																				.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	G	K	V	G	E	T	Y	N	I	G	G	H	N	E	R	K	N	L	D	V	V	E	T	I	C	E	L	L	E	E	L	A	P	N	K	P	H	G	V	A	H	Y	R	D	L	I	T	F	V	A	D	R	P	G	H	D	L	R	Y	A	I	D	A	S	K	I	A	R	E	L	G	W	L	P	Q	E	T	F
Query Conservation
Alig confidence					.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	V	.	G	H	G	A	Y	H	F	S	S	G	T	D	V	A	I	K	E	L	Y	D	A	V	V	E	A	M	A	L	P	S	Y	P	E	P	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	L	G	A	P	S	I	L	L	D	P	S	R	T	I	Q	D	F	G	K	I	E	F	T	P	L
Template Known Secondary structure		T	T		.								S		S																	T		S								.	.	.	.	.	.	.	.	.	.	.	.	.							B			B											S
Template Predicted Secondary structure					.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		216	.	.		.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.														.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	M	R	K	T	V	Q	W	Y	L	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E	T	V	A	A	A	V	A	Y	F	R	E	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions