|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
|
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
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| . | . |  |  |  |  |  |
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|  |  |  |  |  |  |  |
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| . |
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|  |  |  |  |  |
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|  |  |  |  |  |  |  |
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Query SS confidence |   |
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| . |
. |
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| . |
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Query Sequence |   |
K | I | V | I | L | P | H | Q | D | L | C | P | D | G | . |
. |
A | V | L | E | A | N | S | G | E | T | I | L | D | A | A | L | R | N | G | I | . |
E | I | E | H | A | C | E | K | S | C | A | C | T | T | C | H | C | I | V | R | E | G | F | D | S | L | P | E | S | S | E | Q | E | D | D | M | L | D | K | A | W | G | L |
Query Conservation |   |
|
|   |
|   |   |   |   |   |   |   |
|   |
| . | . |   |
|
|   |   |   |   |
|   |
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|   |
|   |   |   |   |
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| . |   |
|   |   |   |
|   |
|   |
|   |
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|   |
|   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
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| . | . | . | . | . | . |
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| . | . |
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| . |
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| . | . |
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| . | . | . |
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Template Conservation |   |
|
|
|   |   | . | . | . | . | . | . |   |   |
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |
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|   |
|   |
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|   |
|   |
|   |   |
| . | . |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |   |   |   |
Template Sequence |   |
T | I | T | A | V | . |
. |
. |
. |
. |
. |
K | G | G | V | K | K | Q | L | K | F | E | D | D | Q | T | L | F | T | V | L | T | E | A | G | L | M | S | A | D | D | T | C | Q | G | N | K | A | C | G | K | C | I | C | K | H | V | S | G | . |
. |
K | V | A | A | A | E | D | D | E | K | E | F | L | . |
. |
. |
E | D | Q |
Template Known Secondary structure |   |
 |  |  |  |  | . | . | . | . | . | . |  | T | T |  |  |  |  |  |  |
|
| T | T |  |  |  |  |  |  |  |  | T | T | T | S | S |
|
| T | T | S |
| S | S | S | S | S | S |
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|
|  |  |  |  |  |  | S | . | . |
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|
|  |  |  |  |  |  |  | . | . | . | T | T | S |
Template Predicted Secondary structure |   |
 |  |  |  |  | . | . | . | . | . | . |  |
|
|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |
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|  |  |  |  |  |  |  |  |  |
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| . | . |
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|  |  |  |  |  |  |  | . | . | . |
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Template SS confidence |   |
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  |   |
2 | . | . | . | . | |
|
|
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|
|
. | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | |
|
|
. | . | 70 |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
|
. | . | . | . | . | . | 100 |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
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|
|
|
|
Query Sequence |   |
E | P | E | S | R | L | S | C | Q | A | R | V | T | D | . |
. |
E | D | L | V | V | E | I |
Query Conservation |   |
  |   |   |   |
|
|
|
|
|   |   |
|   |   | . | . |
|   |   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|
|
|
|   |   |   |   |
|   |
|
|   |   |
|   |
|
Template Sequence |   |
P | A | N | A | R | L | A | C | A | I | T | L | S | G | E | N | D | G | A | V | F | E | L |
Template Known Secondary structure |   |
| T | T |  |  |  | G | G | G |
|  |  |
| G | G | G | T | T |
|  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . |
  |