Job Description P32672 Confidence 100.00% Date Thu Jan 5 11:50:00 GMT 2012 Rank 1 Aligned Residues 350 % Identity 17% Template c3qnqD_ PDB info PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Resolution 3.29 Å

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		2	.	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure										.	.	.	.	.																																	.	.
Query SS confidence										.	.	.	.	.																																	.	.
Query Sequence		N	E	L	V	Q	I	L	K	.	.	.	.	.	N	T	R	Q	H	L	M	T	G	V	S	H	M	I	P	F	V	V	S	G	G	I	L	L	A	V	S	V	M	L	Y	G	.	.	K	G	A	V	P	D	A	V	A	D	P	N	L	K	K	L	F	D	I	G	V	A	G	L	T	L	M	V	P	F	L	A	A
Query Conservation										.	.	.	.	.																																	.	.
Alig confidence										.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		K	Y	V	M	P	V	A	G	K	V	A	E	Q	R	H	L	L	A	I	R	D	G	L	V	L	T	M	P	F	L	I	I	G	S	I	F	L	I	I	S	T	L	P	I	P	G	Y	S	E	F	M	A	S	L	F	G	K	N	W	N	V	A	L	G	Y	P	V	S	A	T	F	N	I	M	A	L	I	A	V	F
Template Known Secondary structure		T	T	S																					G	G	G	T	T													T				T	T	T	T	T						T		S			T	T	G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.																																.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	I	G	Y	S	I	A	E	R	S	A	L	A	P	C	A	I	G	A	W	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	S	F	G	A	G	F	F	G	A	L	I	A	G	I	I	G	G	I	V	V	H	Y	L	K	K	I
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	A	Y	R	L	G	E	Y	Y	K	V	D	A	L	A	S	G	A	L	S	L	V	T	F	L	L	A	T	P	F	Q	V	A	Y	I	M	P	G	T	K	E	S	I	L	V	D	G	V	I	P	A	A	L	M	G	S	Q	G	L	F	V	A	M	I	I	A	I	I	S	T	E	I	Y	R	F	L	V	Q	K
Template Known Secondary structure												T	S																	S		S							T	T	T	S							S				T	T	T	T	T	T	T	T																					T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
						124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.	.																																																					.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																					.	.	.	.	.	.
Query Sequence		.	.	.	.	P	V	H	K	V	L	R	S	V	M	P	I	F	I	I	P	I	V	G	T	L	I	T	A	G	I	M	M	W	G	L	G	E	P	V	G	A	L	T	N	S	L	T	Q	W	L	Q	G	M	Q	Q	G	.	.	.	.	.	.	S	I	V	M	L	A	V	I	M	G	L	M	L	A	F	D	M	G
Query Conservation		.	.	.	.																																																					.	.	.	.	.	.
Alig confidence		.	.	.	.																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	I	I	K	M	P	E	T	V	P	P	A	V	T	R	S	F	A	A	L	I	P	G	F	I	V	V	T	V	V	W	I	I	R	L	I	F	E	H	T	T	F	G	S	I	H	N	V	V	G	K	L	L	Q	E	P	L	S	I	L	G	A	S	L	W	G	A	V	I	A	V	I	L	V	H	V	L	W	A
Template Known Secondary structure		T		S					T	T	S																														T	S	S	S		S									T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		194	.	.	.	.	.	200	.							.	.	.	.	.	.	.	.	210	.	.	.	.																.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure										.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	V	N	K	V	A	Y	.	.	.	.	.	.	A	F	M	L	I	C	V	A	Q	G	V	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	A	I	A	A	V	G	I	C	I	P	P	L	G	M	G	L	A	T	L	I	G	R	K	N	F	S	A	E	E	R	E	T	G	K	A	A
Query Conservation										.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation																																																																					.	.
Template Sequence		C	G	I	H	G	A	T	I	V	G	G	V	M	S	P	I	W	L	S	L	M	D	Q	N	R	I	A	F	Q	A	G	Q	D	V	P	N	T	I	T	A	Q	F	F	D	L	W	I	Y	M	G	G	S	G	A	T	L	A	L	V	V	G	M	L	L	F	A	R	.	.	S	Q	Q	L	K	S	L	G	R	L	S
Template Known Secondary structure		T	T	S						T																					T	T						S										T	S		S	S	S	S	S	T													.	.	S										T
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.									.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																		.	.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		L	V	M	G	C	V	G	V	T	E	G	A	I	P	F	A	.	.	.	.	A	A	D	P	L	R	V	I	P	S	I	M	V	G	S	V	C	G	A	V	T	A	A	L	V	G	A	Q	C	Y	A	G	W	G	G	.	.	.	.	.	.	.	.	L	I	V	L	P	V	V	E	G	K	L	G	Y	I	A	A	V
Query Conservation																		.	.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	P	G	I	F	N	I	N	E	M	V	T	F	G	M	P	I	V	M	N	P	L	L	L	I	P	F	I	V	V	P	V	V	L	T	I	V	S	Y	F	A	M	E	W	G	L	V	A	R	P	S	G	A	A	V	T	W	T	T	P	I	L	F	S	G	Y	L	G	S	G	G	K	I	S	G	V	I	L	Q
Template Known Secondary structure		S					T	T									T	T		T	T		T	T	T																					T	T	S	S					S					T	T	S									T	T	T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	G	A	V	V	T	A	V	C	V	N	V	L	K	S	L	A	R	K	N	G	S	S	T	D	E	K	E	D	D	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	N	F	A	L	A	F	V	I	Y	L	P	F	L	K	I	W	D	K	Q	K	I	A	E	E	K	G	E	A	A	A	E
Template Known Secondary structure																												T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.