Job Description P11868 Confidence 94.03% Date Thu Jan 5 11:32:55 GMT 2012 Rank 43 Aligned Residues 317 % Identity 15% Template c3ifrB_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, fggy; PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		V	L	V	I	N	C	G	S	S	S	I	K	F	S	V	L	D	A	S	D	C	E	V	L	M	S	G	I	A	D	G	I	N	S	E	N	A	F	L	S	V	N	G	G	E	P	A	P	L	A	H	H	S	Y	E	G	A	L	K	A	I	A	F	E	L	E	K	R	N	L	N	.	D	S	V	A	L	I	G	H
Query Conservation																																																																									.
Alig confidence																			.														.	.	.	.	.																																				.
Template Conservation																			.														.	.	.	.	.
Template Sequence		V	I	G	L	D	I	G	T	T	S	T	I	A	I	L	V	R	.	L	P	D	T	V	V	A	V	A	S	R	P	T	.	.	.	.	.	T	L	S	S	P	H	P	G	W	A	E	E	D	P	A	Q	W	W	D	N	A	R	A	V	L	A	E	L	K	T	T	A	G	E	S	D	W	R	P	G	G	I	C	V
Template Known Secondary structure									S	S									.	T	T	T											.	.	.	.	.			B		S	S	T	T																									T	G	G	G
Template Predicted Secondary structure																			.														.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		86	.	.	.	90	.								.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.									.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140
Predicted Secondary structure								.	.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.	.	.	.																								.	.	.	.					.
Query SS confidence								.	.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.	.	.	.																								.	.	.	.					.
Query Sequence		R	I	A	H	G	G	.	.	.	.	.	.	.	S	I	F	T	E	S	A	I	I	.	.	.	.	.	T	D	E	V	I	D	N	I	R	R	V	S	P	.	.	.	.	.	.	.	.	L	A	P	L	H	N	Y	A	N	L	S	G	I	E	S	A	Q	Q	L	F	P	G	V	.	.	.	.	T	Q	V	A	.
Query Conservation								.	.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.	.	.	.																								.	.	.	.					.
Alig confidence								.	.	.	.	.	.	.										.	.	.	.	.														.	.	.	.	.	.	.	.																								.	.	.	.					.
Template Conservation
Template Sequence		T	G	X	L	P	A	V	V	L	L	D	D	R	G	A	V	L	R	P	S	I	Q	Q	S	D	G	R	C	G	D	E	V	A	E	L	R	A	E	V	D	S	E	A	F	L	A	R	T	G	N	G	V	T	Q	Q	L	V	T	A	K	L	R	W	I	E	R	H	E	P	A	V	F	G	A	I	A	T	V	C	G
Template Known Secondary structure					S	S		B					T	T	S		B		S					T	T			T	T											S										S	S		S	S	T	T	S																		T		S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
																										141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	D	T	S	F	H	Q	T	M	A	P	E	A	Y	L	Y	G	L	P	W	K	Y	Y	E	E	L	G	V	R	R	Y	G	.	F	H	G	T	S	H	R	Y	V	S	Q	R	A	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.														.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.						.														.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.
Template Sequence		S	Y	D	Y	I	N	X	L	L	T	G	E	R	V	V	D	R	N	W	A	L	E	G	G	F	I	D	L	A	S	G	T	V	E	A	D	L	V	A	L	A	H	I	P	P	S	A	V	P	P	.	.	A	H	P	T	H	R	V	L	G	A	V	T	A	E	A	A	A	L	T	G	L	P	T	G	L	P	V	Y
Template Known Secondary structure																									T				T	T	T	T										T	T	S		G	G	G	S			.	.				T	T	S																	T	T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
									187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																							.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																																							.	.	.
Query Sequence		.	.	.	.	.	.	.	H	S	L	L	N	L	A	E	D	D	S	G	L	V	V	A	H	L	G	N	G	A	S	I	C	A	V	R	N	G	Q	S	V	D	T	S	M	G	M	T	P	L	E	G	L	M	M	G	T	R	S	G	D	V	D	F	G	A	M	S	W	V	A	S	Q	T	N	Q	S	L	.	.	.
Query Conservation		.	.	.	.	.	.	.																																																																							.	.	.
Alig confidence		.	.	.	.	.	.	.																																																																							.	.	.
Template Conservation
Template Sequence		G	G	A	A	D	H	I	A	S	A	L	A	A	G	I	T	R	P	G	D	V	L	L	K	F	G	G	A	G	D	I	I	V	A	S	A	T	A	K	S	R	L	Y	L	D	Y	H	L	V	P	G	L	Y	A	P	N	G	C	X	A	A	T	G	S	A	L	N	W	L	A	K	L	L	A	P	E	A	G	E	A
Template Known Secondary structure														T	T			S	T	T							S	S	S							B	S	S						B			B		S	S	T	T		B							S		S	S											S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
				257	.	.	260	.	.	.	.																					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	G	D	L	E	R	V	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	S	G	L	L	G	I	S	G	L	S	S	D	L	R	V	L	E	K	A	W	H	E	G	H	E	R	A	Q	L	A	I	K	T	F	V	H	R	I	A	R	H	I	A	G	H	A	A	S
Query Conservation		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.												.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.												.	.	.	.	.	.	.	.	.	.
Template Sequence		A	H	A	Q	L	D	A	L	A	A	E	V	P	A	G	A	D	G	L	V	C	L	P	Y	F	L	G	D	P	F	A	S	G	T	F	T	G	L	S	L	.	S	H	T	R	G	H	L	W	R	A	L	.	.	.	.	.	.	.	.	.	.	L	E	A	V	A	L	A	F	R	H	H	V	A	V	L	D	D	I
Template Known Secondary structure												T	S		T	T	G	G	G							T	T			T	T							S			T	.	T											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	R	L	D	G	I	I	F	T	G	G	I	G	E	N	S	S	L	I	R	R	L	V	M	E	H	L	A
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		G	H	A	P	Q	R	F	F	A	S	D	G	G	T	.	R	S	R	V	W	X	G	I	X	A	D	V	L	Q
Template Known Secondary structure		T										S	G	G	G	.	G													T
Template Predicted Secondary structure																.
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.		.	.	.	.	.	.	.	.	420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions