Job Description P11868 Confidence 93.11% Date Thu Jan 5 11:32:55 GMT 2012 Rank 45 Aligned Residues 258 % Identity 17% Template c2ivoC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:up1; PDBTitle: structure of up1 protein Resolution 2.9 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.
Predicted Secondary structure																																																																											.
Query SS confidence																																																																											.
Query Sequence		P	V	V	L	V	I	N	C	G	S	S	S	I	K	F	S	V	L	D	A	S	D	C	E	V	L	M	S	G	I	A	D	G	I	N	S	E	N	A	F	L	S	V	N	G	G	E	P	A	P	L	A	H	H	S	Y	E	G	A	L	K	A	I	A	F	E	L	E	K	R	N	L	N	.	D	S	V	A	L	I
Query Conservation																																																																											.
Alig confidence																					.	.																					.	.	.	.	.	.																											.
Template Conservation																					.	.																					.	.	.	.	.	.
Template Sequence		M	L	A	L	G	I	E	G	T	A	H	T	L	G	I	G	I	V	S	.	.	E	D	K	V	L	A	N	V	F	D	T	L	T	T	E	K	G	G	I	H	.	.	.	.	.	.	P	K	E	A	A	E	H	H	A	R	L	M	K	P	L	L	R	K	A	L	S	E	A	G	V	S	L	D	D	I	D	V	I
Template Known Secondary structure										S	S	S									.	.	S	S													S	S		S			.	.	.	.	.	.																								T			T	T	T
Template Predicted Secondary structure																					.	.																					.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.							40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	R	I	A	H	G	G	S	I	F	T	E	S	A	I	I	T	D	E	V	I	D	N	I	R	R	V	S	P	L	A	P	L	H	N	Y	A	N	L	S	G	I	E	S	A	Q	Q	L	F	P	G	V	T	Q	V	A	V	F	D	T	S	F	H	Q	T	M	A	P	E	A	Y	L	Y	G	L	P	W	K	Y
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	Q	G	P	G	L	G	P	A	L	R	V	V	A	T	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73																												.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																																.	.	.
		164	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		Y	E	E	L	G	V	R	R	Y	G	F	.	H	G	T	S	H	R	Y	V	S	Q	R	A	H	S	L	L	N	L	A	E	D	D	S	G	L	V	V	A	H	L	G	N	G	A	S	I	C	A	V	R	N	G	Q	S	V	D	T	S	M	G	M	T	P	L	E	G	L	M	M	G	T	R	S	G	D	V	D	F
Query Conservation													.
Alig confidence													.										.	.	.	.	.														.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.														.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	K	Y	R	K	P	I	V	G	V	N	H	C	I	A	H	V	E	I	T	.	.	.	.	.	K	M	F	G	V	K	D	P	V	G	L	Y	V	.	.	S	G	G	N	T	Q	V	L	A	L	E	G	G	R	Y	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	T	L	D	I	G	I
Template Known Secondary structure					T	T															G	G	.	.	.	.	.	G	G	G	T			S							.	.		S	S									T	T						.	.	.	.	.	.	.	.	.	.	.	.	.			B	S	S	S
Template Predicted Secondary structure																							.	.	.	.	.														.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.						.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.														.	.	.	150	.	.	.	.
		243	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.															.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	M	S	.	W	V	A	S	Q	T	N	Q	S	L	G	D	L	E	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	K	E	S	G	L	L	G	I	S	G	L	S	S	D	L	R	V	L	E	K	A	W	H	E	G	H	E	R	A	Q	L	A	I	K	T	F	V	H	R	I	A	R	H
Query Conservation						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	N	A	I	D	V	F	A	R	E	L	G	L	G	F	P	G	G	P	K	V	E	K	L	A	E	K	G	E	K	Y	I	E	L	P	Y	A	V	K	G	M	D	L	S	F	S	G	L	L	T	E	A	I	R	K	Y	R	S	G	K	Y	R	V	E	D	L	A	Y	S	F	Q	E	T	A	F	A	A	L	V	E
Template Known Secondary structure												T	T			S	S											T			S										T	T																	T			S
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	H	A	A	S	L	R	R	L	D	G	I	I	F	T	G	G	I	G	E	N	S	S	L	I	R	R	L	V	M	E	H	L	A	V	L	G	L	E	I
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		V	T	E	R	A	V	A	H	T	E	K	D	E	V	V	L	V	G	G	V	A	.	A	N	N	R	L	R	E	M	L	R	I	M	T	E	D	R	G	I	K	F
Template Known Secondary structure													S						S	G	G	G	.	G																T
Template Predicted Secondary structure																							.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions