Job Description P11868 Confidence 77.78% Date Thu Jan 5 11:32:55 GMT 2012 Rank 76 Aligned Residues 237 % Identity 16% Template c1zbsA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg1100; PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18 Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		V	L	V	I	N	C	G	S	S	S	I	K	F	S	V	L	D	A	S	D	C	E	V	L	M	S	G	I	A	D	G	I	N	S	E	N	A	F	L	S	V	N	G	G	E	P	A	P	L	A	H	H	S	Y	E	G	A	L	K	A	I	A	F	E	L	E	K	R	N	L	N	.	.	D	S	V	A	L	I	G
Query Conservation																																																																									.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	I	G	D	S	G	S	T	K	T	D	W	C	I	A	K	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	L	G	R	F	Q	T	S	G	I	N	P	F	Q	Q	D	R	N	E	I	D	T	A	L	R	S	E	V	L	P	A	I	G	Q	K	A	S	S	I	R	A	V	Y
Template Known Secondary structure									S	S									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T	S										T	T	T	T					T	T	S	T	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	R	I	A	H	G	G	S	I	F	T	E	S	A	I	I	T	D	E	V	I	D	N	I	R	R	V	S	P	L	A	P	L	H	N	Y	A	N	L	S	G	I	E	S	A	Q	Q	L	F	P	G	V	T	Q	V	A	V	F	D	T	S	F	H	Q	T	M	A	P	E	A	Y	L	Y	G	L	P	W	K	Y	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	G	A	G	C	T	P	A	K	A	P	X	L	N	E	A	L	D	S	X	L	P	H	C	D	R	I	E	V	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			T	T	T												S	T	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		E	E	L	G	V	R	R	Y	G	F	H	G	T	S	H	R	Y	V	S	Q	R	A	H	S	L	L	N	L	A	E	D	D	S	G	L	V	V	A	H	L	G	N	G	A	S	I	C	A	V	R	N	G	Q	S	V	D	T	S	M	G	M	T	P	L	E	G	L	M	M	G	T	R	S	G	D	V	D	F	G	.
Query Conservation																																																																																	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																															.	.	.	.	.	.	.	.								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	X	L	G	A	A	R	A	L	C	G	D	S	E	.	.	.	.	.	G	I	A	C	I	L	G	T	G	S	N	S	C	L	F	D	G	R	E	I	K	A	N	V	S	P	L	G	Y	I	.	.	.	.	.	.	.	.	L	G	D	E	G	S	G	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	T	S		.	.	.	.	.							S	S	S								S	S	S												.	.	.	.	.	.	.	.				T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
																	97	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.	.	.
																				244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	S	W	V	A	S	Q	T	N	Q	S	L	G	D	L	E	R	V	V	N	K	E	S	G	L	L	G	I	S	G	L	S	S	D	L	R	V	L	E	K	A	W	H	E	G	H	E	R	A	Q	L	A	I	K	T	F	V	H	R	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.									.	.								.	.	.
Template Conservation																																																			.	.									.	.								.	.	.
Template Sequence		V	L	G	R	L	F	I	G	S	L	L	K	G	Q	X	P	E	G	L	C	E	A	F	L	Q	E	Y	G	L	T	S	A	D	I	I	E	S	V	Y	R	K	P	F	P	N	R	F	L	A	.	.	G	F	S	P	F	I	A	Q	.	.	H	L	D	I	P	A	V	.	.	.	Y	S	L	V	Q	N	S	F	D
Template Known Secondary structure													T	T		S		T	T									T	T													S	S								.	.	T	T						T	.	.	T	T	T	S				.	.	.
Template Predicted Secondary structure																																																			.	.									.	.								.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.			.	.	.	.	210	.	.				.	.	.	.	.	.	.	220	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		R	H	I	A	G	H	A	A	S	L	R	R	L	D	G	.	I	I	F	T	G	G	I	G	E	N	S	S	L	I	R	R	L	V	M	E	H	L	A
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		D	F	L	V	R	N	V	L	R	Y	N	R	P	D	L	P	L	H	F	I	G	S	V	A	F	H	Y	R	E	V	L	S	S	V	I	K	K	R	G
Template Known Secondary structure								T	G	G	G			T	T	S						S						T											T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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