|   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | |
|
|
. | . | . | . | . | . | 80 |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . |
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
Query Sequence |   |
V | M | L | D | V | E | G | Y | E | L | D | A | E | E | R | E | I | L | A | H | P | L | V | G | G | L | I | L | F | T | R | N | Y | H | D | P | A | Q | L | R | E | L | V | R | Q | I | R | A | A | S | R | N | R | L | V | V | A | V | D | Q | E | G | G | R | V | Q | R | F | R | E | . |
. |
. |
G | F | T | R | L | P | A |
Query Conservation |   |
  |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   | . | . | . |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|   |
|
|
|   |   |   |
|   |
Template Sequence |   |
V | E | F | A | C | Q | G | S | Q | C | G | A | L | H | A | Q | Y | V | R | D | H | Q | G | H | L | M | W | L | S | E | . |
. |
. |
V | R | K | K | G | A | V | A | A | L | E | D | A | F | G | L | T | G | K | N | T | F | F | S | F | D | . |
. |
. |
. |
. |
V | D | S | L | K | S | S | D | M | P | G | V | S | C | P | A |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T | T | S |
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  |  | . | . | . |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
| S | S |  |  |  |  |  |  | . | . | . | . | . | G | G | G | B | B | T | T | T |
|
|
| B | S | S |
| B |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . | . | . | . | . |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
181 | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | |
|
|
. | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
  |
  |   |
81 | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | |
. | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | Q | S | F | A | A | L | S | G | M | E | E | G | G | K | L | A | Q | E | A | G | W | L | M | A | S | E | M | I | A | M | D | I | D | I | S | . |
F | A | P | V | L | D | V | G | H | I | S | A | A | I | G | E | R | S | Y | H | A | D | P | Q | K | A | L | A | I | A | S | R | F | I | D | G | M |
Query Conservation |   |
  |   |   |
|
|
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |
|
|   |   |   |
|
|
|   |   | . |
|
|
|
|   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|   |   |   | . | . | . | . | . | . | . | . |
|   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |
|   |
|
|
|
|   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|
|
|   |
|
|   |   |   |
|   |
|   |
Template Sequence |   |
A | V | G | L | S | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
E | A | F | D | M | C | F | L | A | G | K | T | P | T | V | M | M | M | D | M | S | E | L | N | P | L | V | E | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Y | R | S | P | R | V | A | V | Y | M | F | Y | H | F | V | L | G | F |
Template Known Secondary structure |   |
S | S |
| B |
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
| T | T |  |  |  |  |  |  |  |
| B |
| T | T | T |
|
| . | . | . | . | . | . | . | . | . | . | . | . | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
253 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . |
  |