Job Description P75949 Confidence 29.41% Date Thu Jan 5 12:16:19 GMT 2012 Rank 18 Aligned Residues 98 % Identity 21% Template c4a1aM_ PDB info PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120																								.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	K	L	A	Q	E	A	G	W	L	M	A	S	E	M	I	.	A	M	D	I	D	I	S	F	A	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	V	G	H	I	S	A	A	I	G	E	R	S	Y	H	A	D	P	Q	K	A	L	A	I	A	S	R	F
Query Conservation																		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	A	A	Y	A	T	G	L	L	L	A	R	R	L	L	K	Q	I	G	L	D	T	V	Y	A	G	Q	T	K	V	D	G	A	Y	F	N	V	D	E	D	Q	K	E	K	K	P	F	K	A	I	L	D	A	G	L	V	R	T	T	T	G	N	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	G	V
Template Known Secondary structure																					T		T	T	T					S	S				S				G	G	G	T			S	S				B						T	T	S				S	S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.
		150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		I	D	G	M	H	E	A	G	.	.	M	K	T	T	G	K	H	F	P	G	H	G	A	V	T	A	D	S	H	K	E	T	P	C	D	P	R	P	Q	A	E	I	R	A	K	D	M	S	V	F	S	S	L	I	R	E
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		L	K	G	A	C	D	G	G	I	N	I	P	H	S	E	S	R	F	P	G	Y	V	R	A	S	D	E	G	E	S	S	K	Y	K	P	E	D	H	K	A	R	I	F	G	K	H	I	D	A	Y	M	K	H	L	K	G
Template Known Secondary structure								T	T		B					S	S	S	S	S	S						S	S																	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions