Job Description P75949 Confidence 100.00% Date Thu Jan 5 12:16:19 GMT 2012 Rank 4 Aligned Residues 329 % Identity 26% Template c3lk6A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:lipoprotein ybbd; PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis Resolution 2.88 Å

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		2	.	.	.	.		.	.	.	10													.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure							.					.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query SS confidence							.					.	.	.	.	.	.	.	.	.	.	.	.																																												.
Query Sequence		G	P	V	M	L	.	D	V	E	G	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	L	D	A	E	E	R	E	I	L	A	H	P	L	V	G	G	L	I	L	F	T	R	N	Y	H	D	P	A	Q	L	R	E	L	V	R	Q	I	R	A	A	S	.	R	N	R	L	V	V	A	V	D	Q	E	G	G	R
Query Conservation							.					.	.	.	.	.	.	.	.	.	.	.	.																																												.
Alig confidence							.					.	.	.	.	.	.	.	.	.	.	.	.																																												.
Template Conservation
Template Sequence		G	Q	M	L	M	P	D	F	R	N	W	Q	K	E	G	E	S	S	P	Q	A	L	T	K	M	N	D	E	V	A	S	L	V	K	K	Y	Q	F	G	G	I	I	L	F	A	E	N	V	K	T	T	K	Q	T	V	Q	L	T	D	D	Y	Q	K	A	S	P	K	I	P	L	M	L	S	I	D	Q	E	G	G	I
Template Known Secondary structure			T	T				B		S					T	T		S	S						S															S			B			T	T	T	T	S	S																S	S	S										B	T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		V	Q	R	F	R	E	G	F	T	R	L	P	A	A	Q	S	F	A	A	L	S	G	M	E	E	G	G	K	L	A	Q	E	A	G	W	L	M	A	S	E	M	I	A	M	D	I	D	I	S	F	A	P	V	L	D	V	G	H	I	S	.	.	A	A	I	G	E	R	S	Y	H	A	D	P	Q	K	A	L	A	I
Query Conservation																																																														.	.
Alig confidence						.																				.	.	.	.																																	.	.
Template Conservation						.																				.	.	.	.
Template Sequence		V	T	R	L	.	G	E	G	T	N	F	P	G	N	M	A	L	G	A	A	R	S	R	I	.	.	.	.	N	A	Y	Q	T	G	S	I	I	G	K	E	L	S	A	L	G	I	N	T	D	F	S	P	V	V	D	I	N	N	N	P	D	N	P	V	I	G	V	R	S	F	S	S	N	R	E	L	T	S	R	L
Template Known Secondary structure		B				.	S	S	S				S													.	.	.	.																	T								B							T	T			S	S	G	G	G	S	S		S	S
Template Predicted Secondary structure						.																				.	.	.	.
Template SS confidence
		129	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		A	S	R	F	I	D	G	M	H	E	A	G	M	K	T	T	G	K	H	F	P	G	H	G	A	V	T	A	D	S	H	K	E	T	P	C	D	P	R	P	Q	A	E	I	R	A	K	D	M	S	V	F	S	S	L	I	R	E	N	K	L	D	A	I	M	P	A	H	V	I	Y	S	D	V	D	P	R	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																																													.																		.	.	.
Template Conservation																																																													.
Template Sequence		G	L	Y	T	M	K	G	L	Q	R	Q	D	I	A	S	A	L	K	H	F	P	G	H	G	D	T	D	V	D	S	H	Y	G	L	P	L	V	S	H	G	Q	E	R	L	R	E	V	E	L	Y	P	F	Q	K	A	I	D	A	G	.	A	D	M	V	M	T	A	H	V	Q	F	P	A	F	D	D	T	T	Y	K
Template Known Secondary structure												T	T									T	T	G	G	G					T	T	T	T														T	T										T	T	.		S								B		T	T	T
Template Predicted Secondary structure																																																													.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
												223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	P	A	S	G	S	P	Y	W	L	K	T	V	L	R	Q	E	L	G	F	D	G	V	I	F	S	D	D	L	S	M	E	G	A	A	I	M	G	S	Y	A	E	R	G	Q	A	S	L	D	A	G	C	D	M	I	L	V	C	N	N	R	K	G	A	V	S	V	L	D	N	L
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																			.	.
Template Conservation																																																																														.	.
Template Sequence		S	K	L	D	G	S	D	I	L	V	P	A	T	L	S	K	K	V	M	T	G	L	L	R	Q	E	M	G	F	N	G	V	I	V	T	N	A	L	N	M	K	A	I	A	D	H	F	G	Q	E	E	A	V	V	M	A	V	K	A	G	V	D	I	A	L	M	P	A	S	V	T	S	L	K	E	E	.	.	Q	K
Template Known Secondary structure			T	T	T		S					B	G	G	G													S				S					S		T	T																					T		S	B					S				S	S	T	T	T	.	.
Template Predicted Secondary structure																																																																														.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	P	I	K	A	E	R	V	T	R	L	Y	H	K	G	S	F	S	R	Q	E	L	M	D	S	A	.	R	W	K	A	I	S	T	R	L	N	Q	L	H	E	R	W	Q	E	E	K
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		F	A	R	V	I	Q	A	L	K	E	A	V	K	N	G	D	I	P	E	Q	Q	I	N	N	S	V	E	R	I	I	S	L	K	I	K	R	G	M	Y	P	A	R	N	S	D	S	T
Template Known Secondary structure															T	T	S	S																			T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions