Job Description P75949 Confidence 18.84% Date Thu Jan 5 12:16:19 GMT 2012 Rank 27 Aligned Residues 208 % Identity 14% Template c3kruC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of the thermostable old yellow enzyme from2 thermoanaerobacter pseudethanolicus e39 Resolution 1.60 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		P	A	Q	L	R	E	L	V	R	Q	I	R	A	A	S	R	N	R	L	V	V	A	V	D	Q	E	G	G	R	V	Q	.	.	.	.	.	R	F	R	E	G	F	T	R	L	P	A	A	Q	S	F	A	A	L	S	G	M	E	E	G	G	K	L	A	Q	E	A	G	W	L	M	A	S	E	M	I	A	M	D	I
Query Conservation																																	.	.	.	.	.
Alig confidence																.																	.	.	.	.	.																																						.
Template Conservation																.																																																											.
Template Sequence		V	K	E	L	K	K	I	V	D	I	C	K	A	N	.	G	A	V	M	G	I	Q	L	A	H	A	G	R	K	C	N	I	S	Y	E	D	V	V	G	P	S	P	I	K	A	G	D	R	Y	K	L	P	R	E	L	S	V	E	E	I	K	S	I	V	K	A	F	G	E	A	A	K	R	.	A	N	L	A	G	Y
Template Known Secondary structure															T	.	T											G	G	G				T	T	S					S	S	S			S	S	T	T	S																									.					T
Template Predicted Secondary structure																.																																																											.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.										.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.									.	.																							.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.									.	.																							.	.	.
Query Sequence		D	I	S	F	A	P	V	L	D	V	G	H	I	.	.	.	.	.	.	.	.	.	S	A	A	I	G	E	R	S	.	.	Y	H	A	D	P	Q	K	A	L	A	I	A	S	R	F	I	D	G	M	H	E	A	.	.	.	G	M	K	T	T	G	K	H	F	P	G	H	G	A	V	T	A	D	S	H	K	E	T
Query Conservation															.	.	.	.	.	.	.	.	.									.	.																							.	.	.
Alig confidence					.	.	.	.	.						.	.	.	.	.	.	.	.	.									.	.																							.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	V	.	.	.	.	.	E	I	H	A	A	H	G	Y	L	I	H	E	F	L	S	P	L	S	N	K	R	K	D	E	Y	G	N	S	I	E	N	R	A	R	F	L	I	E	V	I	D	E	V	R	K	N	W	P	E	N	K	P	I	F	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V
Template Known Secondary structure		S			.	.	.	.	.						T	T	S								T	T	T					S	T	T	S	S	S					T													T	S		T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.																.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	C	D	P	R	P	Q	A	E	I	R	A	K	D	M	S	V	F	S	S	L	I	R	E	N	K	L	D	A	I	M	P	A	H	V	I	Y	S	D	V	D	P	R	P	A	S	G	S	P	Y	W	L	K	T	V	L	R	Q	E	L	G	F	D	G	V	I	F	S	D	D	L	S	M	E	G	A	A	I	M	G
Query Conservation
Alig confidence																											.																																												.	.	.	.	.	.	.	.	.	.
Template Conservation																											.																																												.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	D	D	Y	M	E	G	G	I	N	I	D	M	M	V	E	Y	I	N	M	I	K	D	K	.	V	D	L	I	D	V	S	S	G	G	L	L	N	V	D	I	N	L	Y	P	G	Y	Q	V	K	Y	A	E	T	I	K	K	R	C	N	I	K	T	S	A	V	G	L	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure						S	S	T	T	S														T	T	T	.		S									S	S								T	T	T	T												T							S	S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																																												.	.	.	.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.											.
		260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		S	Y	A	E	R	G	Q	A	S	L	D	A	G	.	C	D	M	I	L	V	C
Query Conservation															.
Alig confidence															.
Template Conservation
Template Sequence		T	T	Q	E	L	A	E	E	I	L	S	N	E	R	A	D	L	V	A	L	G
Template Known Secondary structure													T	T	S		S					S
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions