Job Description P46883 Confidence 100.00% Date Thu Jan 5 12:04:33 GMT 2012 Rank 5 Aligned Residues 617 % Identity 27% Template c3nbbC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:peroxisomal primary amine oxidase; PDBTitle: crystal structure of mutant y305f expressed in e. coli in the copper2 amine oxidase from hansenula polymorpha Resolution 2.05 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		K	R	P	H	P	L	N	A	L	T	A	D	E	I	K	Q	A	V	E	I	V	K	A	S	A	D	F	K	P	N	T	R	F	T	E	I	S	L	L	P	P	D	K	E	A	V	W	A	F	A	L	E	N	K	P	V	D	Q	P	R	K	A	D	V	I	M	L	D	G	K	H	.	.	I	I	E	A	V	V	D
Query Conservation																																																																									.	.
Alig confidence																														.																											.																.	.
Template Conservation																														.																											.
Template Sequence		R	P	A	H	P	L	D	P	L	S	T	A	E	I	K	A	A	T	N	T	V	K	S	Y	F	A	G	K	.	K	I	S	F	N	T	V	T	L	R	E	P	A	R	K	A	Y	I	Q	W	K	E	Q	G	G	P	.	L	P	P	R	L	A	Y	Y	V	I	L	E	A	G	K	P	G	V	K	E	G	L	V	D
Template Known Secondary structure				S	S	T	T	S																		T	T	T	S	.																							S				.													T	T		S	S
Template Predicted Secondary structure																														.																											.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		L	Q	N	N	K	L	L	S	W	Q	P	I	K	D	A	H	G	M	V	L	L	D	D	F	A	S	V	Q	N	I	I	N	N	S	E	E	F	A	A	A	V	K	K	R	G	I	T	.	.	D	A	K	K	V	I	T	T	P	L	T	V	G	Y	F	D	G	K	D	G	L	K	Q	D	A	R	L	L	K	V	I
Query Conservation																																																	.	.
Alig confidence																																																	.	.															.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		L	A	S	L	S	V	I	E	T	R	A	L	E	T	V	Q	P	I	L	T	V	E	D	L	C	S	T	E	E	V	I	R	N	D	P	A	V	I	E	Q	C	V	L	S	G	I	P	A	N	E	M	H	K	V	Y	C	D	P	W	T	I	G	Y	.	.	.	D	E	R	W	G	T	G	K	R	L	Q	Q	A	L
Template Known Secondary structure		T	T	T	T									T	T												T							T											T	T			G	G	G	G	G	G											.	.	.		T	T	T	T	T	S	S
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160				.	.	.	.	.	.	.	.	.	170	.	.	.	.
		277	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.									.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure						.																																												.	.	.	.	.	.	.	.
Query SS confidence						.																																												.	.	.	.	.	.	.	.
Query Sequence		S	Y	L	D	.	V	G	D	G	N	Y	W	A	H	P	I	E	N	L	V	A	V	V	D	L	E	Q	K	K	I	V	K	I	E	E	G	P	V	V	P	V	P	M	T	A	R	P	F	.	.	.	.	.	.	.	.	D	G	R	D	R	V	A	P	A	V	K	P	M	Q	I	I	E	P	E	G	K	N	Y	T
Query Conservation						.																																												.	.	.	.	.	.	.	.
Alig confidence						.													.																															.	.	.	.	.	.	.	.
Template Conservation																			.
Template Sequence		V	Y	Y	R	S	D	E	D	D	S	Q	Y	S	H	P	L	D	.	F	C	P	I	V	D	T	E	E	K	K	V	I	F	I	D	I	P	N	R	R	R	K	V	S	K	H	K	H	A	N	F	Y	P	K	H	M	I	E	K	V	G	A	M	R	P	E	A	P	P	I	N	V	T	Q	P	E	G	V	S	F	K
Template Known Secondary structure						S	S	T	T	S		G	G	G		B		S	.							T	T	T	T									S	S							S						S								S	S														T	T			S
Template Predicted Secondary structure																			.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	G	D	M	I	H	W	R	N	W	D	F	H	L	S	M	N	S	R	V	G	P	M	I	S	T	V	T	Y	N	D	N	G	T	K	R	K	V	M	Y	E	G	S	L	G	G	M	I	V	P	Y	G	D	P	D	I	G	W	Y	F	K	A	Y	L	D	S	G	D	Y	G	M	G	T	L	T	S	P	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	G	N	V	M	E	W	S	N	F	K	F	H	I	G	F	N	Y	R	E	G	I	V	L	S	D	V	S	Y	N	D	H	G	N	V	R	P	I	F	H	R	I	S	L	S	E	M	I	V	P	F	G	S	P	E	F	P	H	Q	R	K	H	A	L	D	I	G	E	Y	G	A	G	Y	M	T	N	P	L	S
Template Known Secondary structure				T	T					T	T									T	T	T												T	T																		B				S	T	T	G	G	G									T		T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.			.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure																																																			.		.	.
Query SS confidence																																																			.		.	.
Query Sequence		R	G	K	D	A	P	S	N	A	V	L	L	N	E	T	I	A	D	Y	T	G	V	P	M	E	I	P	R	A	I	A	V	F	E	R	Y	A	G	P	E	Y	K	H	Q	E	M	G	Q	P	.	N	.	.	V	S	T	E	R	R	E	L	V	V	R	W	I	S	T	V	G	N	Y	D	Y	I	F	D	W	I	F
Query Conservation																																																			.		.	.
Alig confidence																																																			.		.	.																			.
Template Conservation																																																																									.
Template Sequence		L	G	C	D	C	K	G	V	I	H	Y	L	D	A	H	F	S	D	R	A	G	D	P	I	T	V	K	N	A	V	C	I	H	E	E	D	D	G	L	L	F	K	H	S	D	F	R	D	N	F	A	T	S	L	V	T	R	A	T	K	L	V	V	S	Q	I	F	T	A	A	N	.	E	Y	C	L	Y	W	V	F
Template Known Secondary structure		B	T	T	T	B		S	S											T	T	S																									G	G	G	T	T		S																				.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.	.	.	410	.	.
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		H	E	N	G	T	I	G	I	D	A	G	A	T	G	I	E	A	V	K	G	V	K	A	K	T	M	H	D	E	T	A	K	D	D	T	R	Y	G	T	L	I	D	H	N	I	V	G	T	T	H	Q	H	I	Y	N	F	R	L	D	L	D	V	D	G	E	N	N	S	L	V	A	M	D	P	V	V	K	P	N	.
Query Conservation																																																																																	.
Alig confidence																										.	.	.	.	.	.	.																																																	.
Template Conservation																										.	.	.	.	.	.	.
Template Sequence		M	Q	D	G	A	I	R	L	D	I	R	L	T	G	I	L	N	T	Y	I	L	G	D	D	.	.	.	.	.	.	.	E	E	A	G	P	W	G	T	R	V	Y	P	N	V	N	A	H	N	H	Q	H	L	F	S	L	R	I	D	P	R	I	D	G	D	G	N	S	A	A	A	C	D	A	K	S	S	P	Y	P
Template Known Secondary structure			T	T	S																			T	T	.	.	.	.	.	.	.				T	T	T						T	T																		T	T	S	S		B											S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.								.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
				584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.			.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.		.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																													.	.																	.
Query SS confidence		.	.																													.	.																	.
Query Sequence		.	.	T	A	G	G	P	R	T	S	T	M	Q	V	N	Q	Y	N	I	G	N	E	Q	D	A	A	Q	K	F	D	.	.	P	G	T	I	R	L	L	S	N	P	N	K	E	N	R	M	.	G	N	P	V	S	Y	Q	I	I	P	Y	A	G	G	T	H	P	V	A	K	G	A	Q	F	A	P	D	E	W	I	Y
Query Conservation		.	.																													.	.																	.
Alig confidence		.	.																													.	.																	.														.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.
Template Sequence		L	G	S	P	E	N	M	Y	G	N	A	F	Y	S	E	K	T	T	F	K	T	V	K	D	S	L	T	N	Y	E	S	A	T	G	R	S	W	D	I	F	N	P	N	K	V	N	P	Y	S	G	K	P	P	S	Y	K	L	V	S	T	Q	C	.	.	.	.	.	.	P	P	L	L	A	K	E	G	S	L	V	A
Template Known Secondary structure		T	T	B	T	T	B	T	T	S												B						B				G	G	G	T								T	T				T	T	T		S												.	.	.	.	.	.					S		T	T	S
Template Predicted Secondary structure																																																																.	.	.	.	.	.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.							.	550	.	.	.	.	.	.	.	.	.	560
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.			.	.	.	.	.	.	.	.		700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure																																			.	.									.
Query SS confidence																																			.	.									.
Query Sequence		H	R	L	S	F	M	D	K	Q	L	W	V	T	R	Y	H	P	G	E	R	F	P	E	G	K	Y	P	N	R	S	T	H	D	.	.	T	G	L	G	Q	Y	S	K	.	D	N	E	S	L	D	N	T	D	A	V	V	W	M	T	T	G	T	T	H	V	A	R	A	E	E	W	P	I	M	P	T	E	W	V	H
Query Conservation																																			.	.									.
Alig confidence																																			.	.									.
Template Conservation
Template Sequence		K	R	A	P	W	A	S	H	S	V	N	V	V	P	Y	K	D	N	R	L	Y	P	S	G	D	H	V	P	Q	W	S	G	D	G	V	R	G	M	R	E	W	I	G	D	G	S	E	N	I	D	N	T	D	I	L	F	F	H	T	F	G	I	T	H	F	P	A	P	E	D	F	P	L	M	P	A	E	P	I	T
Template Known Secondary structure					G	G	G	G	S	S								T	T				T	T		S	S		T	T			S		S	S								T	T	S		S	B		S	S	B																G	G	G	S	S	S
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	L	K	P	W	N	F	F	D	E	T	P	T	L	G	A	L	K	K	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	M	L	R	P	R	H	F	F	T	E	N	P	G	L	D	I	Q	P	S	Y	A
Template Known Secondary structure								S	S	S	S	S		T	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.