Job Description P46883 Confidence 39.97% Date Thu Jan 5 12:04:33 GMT 2012 Rank 27 Aligned Residues 47 % Identity 21% Template c3mlhA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin; PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain Resolution 2.09 Å

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		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	F	M	D	K	Q	L	W	V	T	R	Y	H	P	G	E	R	F	P	E	G	K	Y	P	N	R	S	T	H	D	T	G	L	G	Q	Y	S	K	D	N	E	S	L	D	N	T	D	A	V	V	W	M	T	T	G	T	T	H	V	A	R	A	E	E
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.					.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.					.	.	.
Template Sequence		A	K	S	F	Y	K	N	L	I	W	L	V	K	K	G	N	S	Y	P	K	L	S	K	S	Y	I	N	D	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	E	V	.	.	.	.	L	V	L	W	.	.	.	G	I	H	H	P	S	T	S	A	D
Template Known Secondary structure							T	T					B		B	T	T	B												.	.	.	.	.	.	.	.	.	.	.	.	S	S	S			.	.	.	.					.	.	.						S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.					.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.													.	.	.	.	.					.	.	.	180				.	.	.	.	.	.	.	.	.	190

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions