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Job DescriptionP46883
Confidence100.00%DateThu Jan 5 12:04:33 GMT 2012
Rank7Aligned Residues611
% Identity24%Templatec3higB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:amiloride-sensitive amine oxidase; PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   121........130.........140........ .150.........160.........170.........180.........190
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Query Sequence  KRPHPLNALTADEIKQAVEIVKASADFK. . . . . . . . . . PNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGK
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Template Sequence  RKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVF. LIEMLLPKKYHVLRFLDKGER. HPVREARAVIFFGD
Template Known Secondary structure 
GGGGG



T
GGG
B

TTSS
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S
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   28.30.........40.........50.........60.........70 .........80.........90. ........100.....
 
   191........200... ......210.........220.........230.. .......240.........250......... 260.
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Query Sequence  HIIEAVVDLQNNK. . . . . . LLSWQPIKDAHGMVLLDDFASVQNIINNS. . EEFAAAVKKRGITDAKKVITTPLTVGY. FD
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Template Sequence  QEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFT
Template Known Secondary structure  SSS

SSS





TT


TTTTS


TGGGS
BSSS
TTSB
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   106...110.........120.........130.........140.........150.........160.........170.........180.....
 
   262.......270.........280.........290.........300.........310....
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Query Sequence  GKDGLKQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVV. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DVAPRGVASGQRRSWLIIQRYVEGYFLHPT. GLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLE
Template Known Secondary structure 
SS
SSSTT


STTGGG
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SSSGGG
TT
SSTT
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   186...190.........200.........210..... ....220.........230.........240.........250.........260....
 
   315....320.........330.........340.........350.........360.........370.........380.........390....
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Query Sequence  PVPMTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGG
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Template Sequence  PPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGG. . . . ERIAYEVSVQE
Template Known Secondary structure 


TTS



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SS


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TT

SSTTTTTTTTT....
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   279280.........290.........300.........310.........320.........330.........340... ......350....
 
   395....400.........410.........420.........430.........440.........450.........460...... ...470...
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Query Sequence  MIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVPMEIPRAIAVFERYAGP. EYKHQEM
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Template Sequence  AVALYGGHTPAGMQTKYLDVG. WGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNS
Template Known Secondary structure 

SS
GGG.G
GGG





BTTTB
TT
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   355....360.........370..... ....380.........390.........400.........410.........420.........430...
 
   474.... .480.........490.........500.........510.........520.........530.........540........
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Query Sequence  GQPNV. . . . . STERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHN
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Template Sequence  NFKGGFNFYAGLKGQVLVLRTTSTVYN. DYIWDFIFYPNGVMEAKMHATGYVHATFY. . . . . . . . . TPEGLRHGTRLHTH
Template Known Secondary structure 
SSSS


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TTS

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GGGGGSTT
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   434.....440.........450.........460 .........470.........480......... 490.........500...
 
   549550.........560.........570.........580..... ....590.........600.........610... ......620....
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Query Sequence  IVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTA. . . GGPRTSTMQVNQYNIGNEQDAAQKFDPG. TIRLLSNPNKE
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Template Sequence  LIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQE
Template Known Secondary structure 

TTSS
TTSTTS

BGGGG
B
SSS


S
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   505....510.........520.........530.........540.........550.........560.........570.........580....
 
   625....630.........640.........650.........660.........670.........680.........690. ........700..
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Query Sequence  NRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEGKYPNRSTHD. . TGLGQYSKDNE
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Template Sequence  NPWGHKRSYRLQIHSM. . . . . . ADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNE
Template Known Secondary structure 
TTS


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S
TTSGGGGGGGGGG
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TT
S
S

TTTTT

SS
S

GGGGGTT

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   585....590.........600 .........610.........620.........630.........640.........650........
 
   703......710.........720....... ..730.........740.........750.....
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Query Sequence  SLDNTDAVVWMTTGTTHVARAEEWP. . IMPTEWVHTLLKPWNFFDETPTLGALKK
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Template Sequence  NIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDT
Template Known Secondary structure  B
SS


GGGSS
B
STT
S
SSS
GGGG
S

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   659660.........670.........680.........690.........700.........710...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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