Job Description P46883 Confidence 100.00% Date Thu Jan 5 12:04:33 GMT 2012 Rank 11 Aligned Residues 593 % Identity 23% Template c2pncB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:copper amine oxidase, liver isozyme; PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine Resolution 2.40 Å

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		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.											.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.
Query Sequence		H	P	L	N	A	L	T	A	D	E	I	K	Q	A	V	E	I	V	K	A	S	A	D	F	.	.	.	.	.	.	.	.	.	.	K	P	N	T	R	F	T	E	I	S	L	L	P	P	D	K	E	A	V	W	A	F	A	L	E	N	K	P	V	D	Q	P	R	K	A	D	V	I	M	L	D	G	K	H	I	I
Query Conservation																										.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.							.																						.
Template Conservation																																										.																						.
Template Sequence		Q	L	F	A	D	L	S	R	E	E	L	T	T	V	M	S	F	L	T	Q	Q	L	G	P	D	L	V	D	A	A	Q	A	R	P	S	D	N	C	V	F	.	S	V	E	L	Q	L	P	P	K	A	A	A	L	A	H	L	D	R	G	S	P	.	P	P	A	R	E	A	L	A	I	V	F	F	G	G	Q	P	Q
Template Known Secondary structure				S																				S	S			B		G	G	G			T	T	S					.																						.														S	S	S	S
Template Predicted Secondary structure																																										.																						.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
						194	.	.	.	.	.	200	.	.	.	.	.	.	.									.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.	.	.	.															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	E	A	V	V	D	L	Q	N	N	K	L	L	S	W	.	.	.	.	.	.	.	.	Q	P	I	K	D	A	H	G	M	V	L	L	D	D	F	A	S	V	Q	N	I	I	N	N	S	E	E	F	A	A	A	V	K	K	R	G	I	T	D	A	K	K	V	I	T	T	P	L	T	V	G	Y	F	D
Query Conservation		.	.	.	.															.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.															.	.	.	.	.	.	.	.																																																					.	.
Template Conservation																																																																																.	.
Template Sequence		P	N	V	T	E	L	V	V	G	P	L	P	Q	P	S	Y	M	R	D	V	T	V	E	R	H	G	G	P	L	P	Y	Y	R	R	P	V	L	L	R	E	Y	L	D	I	D	Q	M	I	F	N	R	E	L	P	Q	A	A	G	V	L	H	H	C	C	S	Y	K	Q	G	G	Q	K	L	L	T	M	N	S	.	.
Template Known Secondary structure											S	T	T	S													S	S				T	T	S	S																		T	G	G	G	G											S	S	S										.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	D	G	L	K	Q	D	A	R	L	L	K	V	I	S	Y	L	D	V	G	D	G	N	Y	W	A	H	P	I	E	N	L	V	A	V	V	D	L	E	Q	K	K	I	V	K	I	E	E	G	P	V	V	P	V	P	M	T	A	R	P	F	D	G	R	D	R	V	A	P	A	V	K	P	M	Q	I	I	E	P
Query Conservation
Alig confidence																																.																																				.	.
Template Conservation																																.																																				.	.
Template Sequence		A	P	R	G	V	Q	S	G	D	R	S	T	W	F	G	I	Y	Y	N	I	T	K	G	G	P	Y	L	H	P	V	.	G	L	E	L	L	V	D	H	K	A	L	D	P	A	D	W	T	V	Q	K	V	F	F	Q	G	R	Y	Y	E	N	L	A	Q	L	E	.	.	E	Q	F	E	A	G	Q	V	N	V	V	V
Template Known Secondary structure		S	S		S	S	S	T	T														S	S		S	T	T				.										S	S	S	G	G	G									T	T				S							.	.					T	T		S
Template Predicted Secondary structure																																.																																				.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	N	Y	T	I	T	G	D	M	I	H	W	R	N	W	D	F	H	L	S	M	N	S	R	V	G	P	M	I	S	T	V	T	Y	N	D	N	G	T	K	R	K	V	M	Y	E	G	S	L	G	G	M	I	V	P	Y	G	D	P	D	I	G	W	Y	F	K	A	Y	L	D	S	G	D	Y	G	M	G	T
Query Conservation
Alig confidence																																								.	.	.	.																																	.
Template Conservation																																								.	.	.	.																																	.
Template Sequence		I	P	D	R	F	S	V	Q	G	N	R	V	A	S	S	L	W	T	F	S	F	G	L	G	A	F	S	G	P	R	V	F	D	V	R	F	Q	G	.	.	.	.	E	R	L	A	Y	E	I	S	L	Q	E	A	G	A	V	Y	G	G	N	T	P	A	A	M	L	T	R	Y	M	D	S	G	.	F	G	M	G	Y
Template Known Secondary structure										T	T					S	S									T	T	T										T	T	.	.	.	.																			S	S										G	G	G	.	T		T	T	T
Template Predicted Secondary structure																																								.	.	.	.																																	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	S	P	I	A	R	G	K	D	A	P	S	N	A	V	L	L	N	E	T	I	A	D	Y	T	G	V	P	M	E	I	P	R	A	I	A	V	F	E	R	Y	A	G	P	E	Y	K	H	Q	E	M	G	Q	P	N	V	S	T	E	R	R	E	L	V	V	R	W	I	S	T	V	G	N	Y	D	Y	I	F	D
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.																		.
Template Conservation																																																				.	.	.	.	.	.	.																		.
Template Sequence		F	A	T	P	L	I	R	G	V	D	C	P	Y	L	A	T	Y	M	D	W	H	F	V	V	E	S	Q	T	P	K	T	L	H	D	A	F	C	V	F	E	Q	N	K	G	L	P	L	R	R	G	.	.	.	.	.	.	.	G	V	A	Q	T	V	L	V	F	R	S	V	S	T	M	L	N	.	D	Y	V	W	D
Template Known Secondary structure		T						B	T	T	T	B		T	T											S	S	S	S																			S				.	.	.	.	.	.	.															S			.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.																		.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.								.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.		460	.	.	.	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	F	H	E	N	G	T	I	G	I	D	A	G	A	T	G	I	E	A	V	K	G	V	K	A	K	T	M	H	D	E	T	A	K	D	D	T	R	Y	G	T	L	I	D	H	N	I	V	G	T	T	H	Q	H	I	Y	N	F	R	L	D	L	D	V	D	G	E	N	N	S	L	V	A	M	D	P	V	V	K
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.
Template Sequence		M	V	F	Y	P	N	G	A	I	E	V	K	L	H	A	T	G	Y	I	S	S	A	F	L	F	.	.	.	.	.	.	.	.	.	G	A	A	R	R	Y	G	N	Q	V	G	E	H	T	L	G	P	V	H	T	H	S	A	H	Y	K	V	D	L	D	V	G	G	L	E	N	W	V	W	A	E	D	M	A	F	V
Template Known Secondary structure						T	T	S										B									.	.	.	.	.	.	.	.	.	S	S	G	G	G	G						T	T																		T	T	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500										.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		582	.	.	.	.				.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.		.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																														.
Query SS confidence							.	.	.																														.
Query Sequence		P	N	T	A	G	.	.	.	G	P	R	T	S	T	M	Q	V	N	Q	Y	N	I	G	N	E	Q	D	A	A	Q	K	F	D	P	G	T	I	.	R	L	L	S	N	P	N	K	E	N	R	M	G	N	P	V	S	Y	Q	I	I	P	Y	A	G	G	T	H	P	V	A	K	G	A	Q	F	A	P	D	E	W	I
Query Conservation							.	.	.																														.
Alig confidence							.	.	.																														.																										.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.
Template Sequence		P	T	A	I	P	W	S	P	E	H	Q	I	Q	R	L	Q	V	T	R	K	Q	L	E	T	E	E	Q	A	A	F	P	L	G	G	A	S	P	R	Y	L	Y	L	A	S	K	Q	S	N	K	W	G	H	P	R	G	Y	R	I	Q	T	V	S	F	.	.	.	.	.	.	A	G	G	P	M	P	Q	N	S	P	M
Template Known Secondary structure						T	T																		B	G	G	G	G				T	T	S				S											T	T	S													.	.	.	.	.	.							T	T	S	T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.	.
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.							610	.	.	.	.	.	.	.	.	.	620
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.		.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.			.	.	730	.	.	.	.
Predicted Secondary structure																																								.																																	.	.
Query SS confidence																																								.																																	.	.
Query Sequence		Y	H	R	L	S	F	M	D	K	Q	L	W	V	T	R	Y	H	P	G	E	R	F	P	E	G	K	Y	P	N	R	S	T	H	D	T	G	L	G	.	Q	Y	S	K	D	N	E	S	L	D	N	T	D	A	V	V	W	M	T	T	G	T	T	H	V	A	R	A	E	E	W	P	.	.	I	M	P	T	E	W	V
Query Conservation																																								.																																	.	.
Alig confidence																																								.																																	.	.
Template Conservation
Template Sequence		E	R	A	F	S	W	G	R	Y	Q	L	A	I	T	Q	R	K	E	T	E	P	S	S	S	S	V	F	N	Q	N	D	P	W	T	P	T	V	D	F	S	D	F	I	N	N	E	T	I	A	G	K	D	L	V	A	W	V	T	A	G	F	L	H	I	P	H	A	E	D	I	P	N	T	V	T	V	G	N	G	V
Template Known Secondary structure		G	G	G	G	G	G	G	G										T	T				S	S		T	T	S	T	T			S	S		S			G	G	G	G		S	S		B		S	S																	G	G	G	S	S		B				S
Template Predicted Secondary structure
Template SS confidence
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	L	L	K	P	W	N	F	F	D	E	T	P	T	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	F	L	R	P	Y	N	F	F	D	Q	E	P	S	M	D
Template Known Secondary structure									S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.