Job Description P46883 Confidence 100.00% Date Thu Jan 5 12:04:33 GMT 2012 Rank 2 Aligned Residues 620 % Identity 29% Template c1ksiA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution Resolution 2.20 Å

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		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		P	H	P	L	N	A	L	T	A	D	E	I	K	Q	A	V	E	I	V	K	A	S	A	D	.	F	K	P	N	T	R	F	T	E	I	S	L	L	P	P	D	K	E	A	V	W	A	F	A	L	E	N	K	P	V	D	Q	P	R	K	A	D	V	I	M	L	D	G	K	H	I	I	E	A	V	V	D	L	Q	N
Query Conservation																										.
Alig confidence																										.
Template Conservation
Template Sequence		Q	H	P	L	D	P	L	T	K	E	E	F	L	A	V	Q	T	I	V	Q	N	K	Y	P	I	S	N	N	R	L	A	F	H	Y	I	G	L	D	D	P	E	K	D	H	V	L	R	Y	E	T	H	P	T	L	V	S	I	P	R	K	I	F	V	V	A	I	I	N	S	Q	T	H	E	I	L	I	N	L	R	I
Template Known Secondary structure			S	T	T																			S		T	T	T																									G	G	G														T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		N	K	L	L	S	W	Q	P	I	K	D	.	A	H	G	M	V	L	L	D	D	F	A	S	V	Q	N	I	I	N	N	S	E	E	F	A	A	A	V	K	K	R	G	I	T	D	A	K	K	V	I	T	T	P	L	T	V	G	Y	F	D	G	K	D	G	L	K	Q	D	A	R	L	L	K	V	I	S	Y	L	D
Query Conservation													.
Alig confidence													.																																				.															.	.	.	.
Template Conservation																																																	.															.	.	.	.
Template Sequence		R	S	I	V	S	D	N	I	H	N	G	Y	G	F	P	I	L	S	V	D	E	Q	S	L	A	I	K	L	P	L	K	Y	P	P	F	I	D	S	V	K	K	R	G	L	N	L	S	.	E	I	V	C	S	S	F	T	M	G	W	F	G	E	.	.	.	.	E	K	N	V	R	T	V	R	L	D	C	F	M	K
Template Known Secondary structure		T										S	S		B												T	T	G	G	G	G											T	T			G	G	.	G												S		.	.	.	.	S
Template Predicted Secondary structure																																																	.															.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		V	G	D	G	N	Y	W	A	H	P	I	E	N	L	V	A	V	V	D	L	E	Q	K	K	I	V	K	I	E	E	G	P	V	V	P	V	P	M	T	A	R	P	F	D	G	R	.	.	.	.	D	R	V	A	P	A	V	K	P	M	Q	I	I	E	P	E	G	K	N	Y	T	I	T	G	D	M	I	H	W	R
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.
Template Conservation
Template Sequence		E	S	T	V	N	I	Y	V	R	P	I	T	G	I	T	I	V	A	D	L	D	L	M	K	I	V	E	Y	H	D	R	D	I	E	A	V	P	T	A	E	N	T	E	Y	Q	V	S	K	Q	S	P	P	F	G	P	K	Q	H	S	L	T	S	H	Q	P	Q	G	P	G	F	Q	I	N	G	H	S	V	S	W	A
Template Known Secondary structure		S	S		S		G	G	G	S				S							T	T	T	T																	T	T					S	T	T			S														T	T			S					T	T					T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		N	W	D	F	H	L	S	M	N	S	R	V	G	P	M	I	S	T	V	T	Y	N	D	.	.	N	G	T	K	R	K	V	M	Y	E	G	S	L	G	G	M	I	V	P	Y	G	D	P	D	I	G	W	Y	F	K	A	Y	L	D	S	G	D	Y	G	M	G	T	L	T	S	P	I	A	R	G	K	D	A	P	S
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		N	W	K	F	H	I	G	F	D	V	R	A	G	I	V	I	S	L	A	S	I	Y	D	L	E	K	H	K	S	R	R	V	L	Y	K	G	Y	I	S	E	L	F	V	P	Y	Q	D	P	T	E	E	F	Y	F	K	T	F	F	D	S	G	E	F	G	F	G	L	S	T	V	S	L	I	P	N	R	D	C	P	P
Template Known Secondary structure		T									T	T	T												T	T	T	T																		B				S	T	T	T	T	T											T	T	T	T	B					B	T	T	T	B		T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.				.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
Predicted Secondary structure																																												.								.	.	.
Query SS confidence																																												.								.	.	.
Query Sequence		N	A	V	L	L	N	E	T	I	A	D	Y	T	G	V	P	M	E	I	P	R	A	I	A	V	F	E	R	Y	A	G	P	E	Y	K	H	Q	E	M	G	Q	P	.	N	V	S	T	E	R	R	.	.	.	E	L	V	V	R	W	I	S	T	V	G	N	Y	D	Y	I	F	D	W	I	F	H	E	N	G	T	I
Query Conservation																																												.								.	.	.
Alig confidence																																												.								.	.	.													.
Template Conservation																																																																			.
Template Sequence		H	A	Q	F	I	D	T	Y	V	H	S	A	N	G	T	P	I	L	L	K	N	A	I	C	V	F	E	Q	Y	G	N	I	M	W	R	H	T	E	N	G	I	P	N	E	S	I	E	E	S	R	T	E	V	N	L	I	V	R	T	I	V	T	V	G	N	.	D	N	V	I	D	W	E	F	K	A	S	G	S	I
Template Known Secondary structure		T											T	T																												S	T	T																							.										T	T	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.		.	.	.	390	.	.	.	.	.	.	.	.	.	400
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																																												.
Query SS confidence																																																																												.
Query Sequence		G	I	D	A	G	A	T	G	I	E	A	V	K	G	V	K	A	K	T	M	H	D	E	T	A	K	D	D	T	R	Y	G	T	L	I	D	H	N	I	V	G	T	T	H	Q	H	I	Y	N	F	R	L	D	L	D	V	D	G	E	N	N	S	L	V	A	M	D	P	V	V	K	P	N	T	.	A	G	G	P	R
Query Conservation																																																																												.
Alig confidence																								.	.	.																																																		.
Template Conservation																								.	.	.
Template Sequence		K	P	S	I	A	L	S	G	I	L	E	I	K	G	T	N	I	K	H	K	D	E	.	.	.	I	K	E	D	L	H	G	K	L	V	S	A	N	S	I	G	I	Y	H	D	H	F	Y	I	Y	Y	L	D	F	D	I	D	G	T	H	N	S	F	E	K	T	S	L	K	T	V	R	I	K	D	G	S	S	K	R
Template Known Secondary structure									S								S			S	G	G	G	.	.	.			S			S						T	T																		T	T	S	S		B														S	S		S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.		.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	S	T	M	Q	V	N	Q	Y	N	I	G	N	E	Q	D	A	A	Q	K	F	D	P	G	.	T	I	R	L	L	S	N	P	N	K	E	N	R	M	G	N	P	V	S	Y	Q	I	I	P	Y	A	G	G	T	H	P	V	A	K	G	A	Q	F	A	P	D	E	W	I	Y	H	R	L	S	F	M	D	K	Q	L
Query Conservation																										.
Alig confidence																										.																												.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		K	S	Y	W	T	T	E	T	Q	T	A	K	T	E	S	D	A	K	I	T	I	G	L	A	P	A	E	L	V	V	V	N	P	N	I	K	T	A	V	G	N	E	V	G	Y	R	L	I	P	A	I	P	.	.	.	.	.	.	A	H	P	L	L	T	E	D	D	Y	P	Q	I	R	G	A	F	T	N	Y	N	V
Template Known Secondary structure		S												B	G	G	G	G		B		T	T	S	S														T	T	S											S		.	.	.	.	.	.					S		T	T	S						T	G	G	G	G		S
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530							.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	T	R	Y	H	P	G	E	R	F	P	E	G	K	Y	P	N	R	S	T	H	D	T	G	L	G	Q	Y	S	K	D	N	E	S	L	D	N	T	D	A	V	V	W	M	T	T	G	T	T	H	V	A	R	A	E	E	W	P	I	M	P	T	E	W	V	H	T	L	L	K	P	W	N	F	F	D	E	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	V	T	A	Y	N	R	T	E	K	W	A	G	G	L	Y	V	D	H	S	R	G	D	D	T	L	A	V	W	T	K	Q	N	R	E	I	V	N	K	D	I	V	M	W	H	V	V	G	I	H	H	V	P	A	Q	E	D	F	P	I	M	P	L	L	S	T	S	F	E	L	R	P	T	N	F	F	E	R	N	P
Template Known Secondary structure								T	T				T	T		S			B	T			S	S	S	S					G	G	G			B		S	S	B																G	G	G	S	S	S													S	S		S	S	S		T
Template Predicted Secondary structure
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
		749	750	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	G	A	L	K	K	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	K	T	L	S	P	R	D
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.	.	.	640	.