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Job DescriptionP46883
Confidence100.00%DateThu Jan 5 12:04:33 GMT 2012
Rank1Aligned Residues719
% Identity100%Templatec1d6uB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   36...40.........50.........60.........70.........80.........90.........100.........110.....
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Query Sequence  HMVPMDKTLKEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSDTFINDVFQSGLDQ
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Template Sequence  HMVPMDKTLKEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSDTFINDVFQSGLDQ
Template Known Secondary structure 
T
TTTTTT
TT
STT
SS

TTTTTSSS

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   6...10.........20.........30.........40.........50.........60.........70.........80.....
 
   116...120.........130.........140.........150.........160.........170.........180.........190.....
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Query Sequence  TFQVEKRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGKHIIEA
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Template Conservation         







  

  
  


          
  
 
 

 
  

  
    
  


 
 

        
 
Template Sequence  TFQVEKRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLPPDKEAVWAFALENKPVDQPRKADVIMLDGKHIIEA
Template Known Secondary structure  S

SS

TT



TTSTT

TT








S

TT
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   86...90.........100.........110.........120.........130.........140.........150.........160.....
 
   196...200.........210.........220.........230.........240.........250.........260.........270.....
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Query Sequence  VVDLQNNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV
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Template Conservation 



    
      
        

    
  
   
 
 


   

     
  


  
     
      

 
 
Template Sequence  VVDLQNNKLLSWQPIKDAHGMVLLDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKV
Template Known Secondary structure  TTTTTT





T
TTT
S
GGG






TTTT


TTS
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   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   276...280.........290.........300.........310.........320.........330.........340.........350.....
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Query Sequence  ISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHW
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Template Conservation    
      
 

 

 
   


    


 
      
 
            
  



 
 



 

 
 
  
 
Template Sequence  ISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVKPMQIIEPEGKNYTITGDMIHW
Template Known Secondary structure 

SSS
GGGSTTTT







S


SSSTTS











TT

STT
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   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   356...360.........370.........380.........390.........400.........410.........420.........430.....
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Query Sequence  RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN
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Template Sequence  RNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSN
Template Known Secondary structure  TTTTTTTB


STTTTT


TTTTB



TTTTS
TT
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   326...330.........340.........350.........360.........370.........380.........390.........400.....
 
   436...440.........450.........460.........470.........480.........490.........500.........510.....
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Query Sequence  AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVSTERRELVVRWISTVGNYDYIFDWIFHENGTIGIDAG
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Template Sequence  AVLLNETIADYTGVPMEIPRAIAVFERYAGPEYKHQEMGQPNVSTERRELVVRWISTVGN. DYIFDWIFHENGTIGIDAG
Template Known Secondary structure 

TTS


TTS





.
TTS
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   406...410.........420.........430.........440.........450.........460..... ....470.........480....
 
   516...520.........530.........540.........550.........560.........570.........580.........590.....
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Query Sequence  ATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQV
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Template Sequence  ATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNTAGGPRTSTMQV
Template Known Secondary structure 



S
SSTTSTTTTTTT

TTSS

S
SS
S
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   486...490.........500.........510.........520.........530.........540.........550.........560.....
 
   596...600.........610.........620.........630.........640.........650.........660.........670.....
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Query Sequence  NQYNIGNEQDAAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHP
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Template Sequence  NQYNIGNEQDAAQKFDPGTIRLLSNPNKENRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHP
Template Known Secondary structure 
BSB


TTS
TTS
S
S
BSS
B

S

S
TT


TTS
S

T
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   566...570.........580.........590.........600.........610.........620.........630.........640.....
 
   676...680.........690.........700.........710.........720.........730.........740.........750.....
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Query Sequence  GERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKK
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Template Sequence  GERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTLGALKK
Template Known Secondary structure  T


SS
S

TT
SS

STT

B
SS


GGGSSSSSSSS
TTS




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   646...650.........660.........670.........680.........690.........700.........710.........720.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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