|   |
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | |
. | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | |
|
|
. | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
Query Sequence |   |
D | P | H | N | L | G | A | C | L | R | S | A | D | A | A | G | V | H | A | V | I | V | P | K | D | R | S | A | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | N | A | T | A | K | K | V | A | C | G | A | A | E | S | V | P | . |
L | I | R | V | T | N | L | A | R | T | M | R | M | L | Q | . |
. |
. |
E | E | N | I |
Query Conservation |   |
|
|   |
|
|
|   |
|   |
|
|
|   |
|   |
|   |   |   |
|
|
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |
|   | . |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   | . | . | . |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
Template Conservation |   |
  |   |   |
|
|
|   |
|
|
|
|   |   |   |   |
|
|   |   |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|   |
|
|
|   |   |
|   |
|   |   |
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
T | N | L | D | V | H | D | I | A | R | T | A | R | T | Y | N | L | K | G | Y | Y | I | V | T | N | L | R | A | Q | Q | D | M | V | S | K | M | L | K | F | W | R | E | G | F | G | S | R | Y | N | P | S | R | A | E | S | L | K | L | V | K | L | K | S | Y | L | E | D | V | L | E | D | I | E | S | V | E | G | E | R | P |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | G | G | G | G | T |
| S | S | S |  |  |  |  | T | T |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
|
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
  |
  |   |
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | |
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
W | I | V | G | T | A | G | E | A | D | H | T | L | Y | . |
. |
. |
. |
. |
. |
. |
Q | S | K | M | T | G | R | L | A | L | V | M | G | A | E | G | E | G | M | R | R | L | T | R | E | H | C | D | E | L | I | . |
S | I | P | M | A | G | S | V | S | S | L | N | V | S | V | A | T | G | I | C | L | F | E | A | V | R | Q |
Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |
|   |   |
| . |   |
|
|   |   |
|   |   |   |
|
|
|
|
|
|
|   |   |
|   |
|
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |
|
|   |   |   |   |
|   |
|
|
|
|
|   |
|
|
|
|
|
|   |   |
|   |   |   |
Template Sequence |   |
L | I | F | F | T | S | A | K | K | R | E | N | D | I | S | F | E | E | G | R | R | I | I | I | E | T | E | K | P | V | L | I | L | L | G | T | G | W | G | L | P | D | E | I | L | E | I | S | D | Y | V | L | E | P | I | R | A | Q | S | D | F | N | H | L | S | V | R | A | A | A | A | I | I | I | D | R | L | I | G | E |
Template Known Secondary structure |   |
 |  |  |  |
|
| S | S |
|
| S | S |
| B |
|  |  |  |  |  |  |  |  |  |  |
|
| S |
|  |  |  |  |  |
|
| T | T |
|
|
|  |  |  |  | T | T |
| S |  |  | B |
|
| T | T | T | T | S | S |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . |
  |