Job Description P63177 Confidence 100.00% Date Thu Jan 5 12:07:51 GMT 2012 Rank 4 Aligned Residues 221 % Identity 24% Template c2i6dA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna methyltransferase, trmh family; PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis. Resolution 1.85 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	Y	G	I	H	A	V	Q	A	L	L	E	R	A	P	E	R	F	Q	E	V	F	I	L	K	G	R	E	D	K	R	L	L	P	L	I	H	A	L	E	S	Q	G	V	V	I	Q	L	A	N	R	Q	Y	L	D	E	K	S	D	G	A	V	H	Q	G	I	I	A	R	V	K	P	G	R	Q	Y	Q	E	N
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.																																							.	.
Template Conservation																																		.	.	.	.	.	.	.	.																																							.	.
Template Sequence		A	V	E	G	P	K	L	V	G	E	X	L	P	F	Y	R	C	R	X	L	V	G	T	A	A	X	L	R	A	V	S	T	.	.	.	.	.	.	.	.	P	H	D	A	E	V	V	E	L	P	E	S	F	D	F	K	R	I	S	T	Q	T	T	P	Q	P	L	X	A	V	F	D	L	P	A	E	P	E	.	.
Template Known Secondary structure					S								G	G	G	S														T	S			.	.	.	.	.	.	.	.		T	T								T	T			G	G	G	T			S	S	S			S													.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.									.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	D	L	I	A	S	L	D	Q	P	F	L	L	I	L	D	G	V	T	D	P	H	N	L	G	A	C	L	R	S	A	D	A	A	G	V	H	A	V	I	V	P	K	D	R	S	A	Q	L	N	A	T	A	K	K	V	A	C	G	A	A	E	S	V	P	L	I	R	V	T	N	L	A	R	T	M	R	M
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	P	V	V	E	G	L	T	L	L	L	D	G	V	Q	D	P	G	N	V	G	T	I	L	R	T	A	D	W	F	G	I	R	H	V	W	L	G	T	G	S	A	D	V	F	S	P	K	V	V	Q	A	S	X	G	A	L	A	R	V	Q	P	T	P	L	K	N	T	V	D	T	L	A	Y
Template Known Secondary structure		.	.	.	.	.	.	.					S							S																		T								T	T				T	T	S						T	S	T	T	G	G	G	T							S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																					.	.																																							.
Query SS confidence																					.	.																																							.
Query Sequence		L	Q	E	E	N	I	W	I	V	G	T	A	G	E	A	D	H	T	L	.	.	Y	Q	S	K	M	T	G	R	L	A	L	V	M	G	A	E	G	E	G	M	R	R	L	T	R	E	H	C	D	E	L	I	S	I	P	M	A	G	.	S	V	S	S	L	N	V	S	V	A	T	G	I	C	L	F	E	A	V	R
Query Conservation																					.	.																																							.
Alig confidence																					.	.																																							.
Template Conservation
Template Sequence		F	R	R	Q	G	I	P	V	Y	G	A	F	L	D	G	Q	S	L	Y	E	A	P	L	P	N	F	T	E	P	A	I	L	V	L	G	S	E	G	R	G	I	S	P	E	V	A	A	E	I	T	D	R	L	T	I	P	A	S	G	L	S	V	E	S	L	N	V	A	I	A	T	A	I	L	C	S	E	W	R	R
Template Known Secondary structure					T	T													T	T	T	S					T	T	S								B	T	T	T	B	S						T	T		S									S	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		241
Predicted Secondary structure
Query SS confidence
Query Sequence		Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		253

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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