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Job DescriptionP37443
Confidence98.72%DateThu Jan 5 11:55:38 GMT 2012
Rank66Aligned Residues155
% Identity20%Templatec3spuB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   511........520.........530.........540.........550.........560.........570.........580
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Query Sequence  AMVIARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWPMLWIRS. . . . . . . . . .
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Template Sequence  GLIVRDGGRVLVVDTA. . . WTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA. GIATYANALSNQLAPQE
Template Known Secondary structure  TT


...SST



SSSTTT.T
GGGG
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   77..80.........90.. .......100.........110.........120.........130..... ....140.........150..
 
   581........590.........600.........610.........620.........630........ .
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Query Sequence  . . . . . PLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVKVDDGTNSILLTGDI. . . . . . . . . . . . . . . . E
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Template Sequence  GMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDN. . . . . . ITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADT
Template Known Secondary structure  T



S
B
TTSBB
GGGSTT
TT


SSSSSS
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TTSS
TTT


TT
S




TT

T
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   153......160.........170.........180.........190... ......200.........210.........220......
 
   640.........650.........660.........670........
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Query Sequence  APAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRV
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Template Sequence  EHYAASARAFGAAFPKASMI. VMSHSAPDS. . RAAITHT
Template Known Secondary structure  TTSTT

.TT
..T
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   227..230.........240...... ...250..... ....260..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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