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Job DescriptionP37443
Confidence22.63%DateThu Jan 5 11:55:38 GMT 2012
Rank192Aligned Residues204
% Identity11%Templatec3ivdA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:nucleotidase; PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   517..520.........530....... ..540.........550.........560.........570.... .....580.....
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Query Sequence  NGKAILYDTGLAWPEGDSGQQ. . . . LIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILHIWP. . . . . . . MLWIRSPLNWE
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Template Sequence  NKATWFFDAGDYFTGPYISSLTKGKAIIDIXNTXPF. . DAVTIGNHEFDH. . GWDNTLLQLSQAKFPIVQGNIFYQNS. S
Template Known Secondary structure 
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SSSSTTTTTTS

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GGGGTT..
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   6970.........80.........90.........100.... .....110...... ...120.........130.........140.. .
 
   586...590.........600....... ..610.........620.........630.........640.........650.........660
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Query Sequence  HHQPCVRGEAWQWQGLRFSAHW. . . . . PLQGSNDKGNNHSCVVKVDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQ
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Template Sequence  KSFWDKPYTIIEKDGVKIGVIGLHGVFAFNDTVSAATRVGIEA. . . . . . . . . . . . . RDEIKWLQRYIDELKGKVDL. TVA
Template Known Secondary structure 
BSSS
STT
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GGGSTT.............

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   144.....150.........160.........170.........180...... ...190.........200...... ...
 
   661........670. ........680.........690.........700.........710....... ..720...
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Query Sequence  VPHHGSNTSSS. . . . . . . . . . . . . LPLIQRVNGKVALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQ. . . . GQTTVN
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Template Sequence  LIHEGVPARQSSXGGTDVRRALDKDIQTASQVKGLDILITG. . . . . . HAHVGTPEPIKVGNTLILSTDSGGIDVGKLVLD
Template Known Secondary structure 
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SSGGGSS




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   210.........220.........230.........240.........250 .........260.........270.........280...
 
   724.....730.........740.....
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Query Sequence  FSAQGWRISSLREQILPRWYHQ
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Template Conservation                        
Template Sequence  YKEKPHNFTVKNFELKTIYADE
Template Known Secondary structure  TTTT
BGGG
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   284.....290.........300.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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