 |
Job Description | P37443 | Confidence | 47.65% | Date | Thu Jan 5 11:55:38 GMT 2012 |
Rank | 133 | Aligned Residues | 87 |
% Identity | 10% | Template | c3dahB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase; |
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
|
Resolution | 2.30 Å |
|
 |
  |   |
498 | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | W | Q | L | Y | M | L | D | V | G | Q | G | L | A | M | V | I | A | R | N | G | K | A | I | L | Y | D | T | G | L | A | W | P | E | G | D | S | G | Q | Q | L | I | I | P | W | L | H | W | H | N | L | E | P | E | G | V | I | L | S | H | E | H | L | D | H | R | G | G | L | D | S | I | L | H | I | W | P | M | L | W |
Query Conservation |   |
  |   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|
|   |   |
|   |
|
|
|
|
|   |
|   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|
|
|
| . | . | . | . | . |
|
|   |
|
|
|
| . | . | . | . | . | . | . |
|   |   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |
|
|   |
|
| . | . |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |
Template Sequence |   |
N | C | D | L | A | I | G | E | V | E | G | R | T | C | V | I | M | D | D | . |
. |
. |
. |
. |
M | V | D | T | A | G | T | . |
. |
. |
. |
. |
. |
. |
L | C | K | A | A | Q | V | L | K | E | R | G | A | K | Q | V | F | A | Y | A | T | H | P | V | L | . |
. |
S | G | G | A | A | D | R | I | A | A | S | A | L | D | E |
Template Known Secondary structure |   |
T |
|  |  |  |
|
|
|
| T | T |
|  |  |  |  |  |  |  | . | . | . | . | . |  |  | S | S |
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T | T | T | T |
| S |  |  |  |  |  |  |  |  |  |
|
| . | . |
| S | S |  |  |  |  |  |  | T | S | S |
| S |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
188 | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 210 | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | |
|
. | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . |
  |
  |   |
578 | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | S | P | L | N | W | E | H | H | Q | P | C | V | R | G | E | A | W | Q | W |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
L | V | V | T | D | T | I | P | L | S | A | E | S | L | A | C | P | K | I | R | A |
Template Known Secondary structure |   |
 |  |  |  | S | S | S |
|
|
|  |  |  |  |  |
| T | T |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|