Job Description P37443 Confidence 99.25% Date Thu Jan 5 11:55:38 GMT 2012 Rank 21 Aligned Residues 209 % Identity 19% Template c3bk2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:metal dependent hydrolase; PDBTitle: crystal structure analysis of the rnase j/ump complex Resolution 2.10 Å

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		496	.	.	.	500	.	.	.	.	.	.	.	.				.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.				.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																										.									.	.	.
Query SS confidence															.	.	.																										.									.	.	.
Query Sequence		P	D	E	W	Q	L	Y	M	L	D	V	G	Q	.	.	.	G	L	A	M	V	I	A	R	N	G	K	A	I	L	Y	D	T	G	L	A	W	P	E	G	D	.	S	G	Q	Q	L	I	I	P	.	.	.	W	L	H	W	H	N	L	E	P	E	G	V	I	L	S	H	E	H	L	D	H	R	G	G	L	D	S
Query Conservation															.	.	.																										.									.	.	.
Alig confidence															.	.	.																										.									.	.	.
Template Conservation
Template Sequence		Q	D	H	V	E	I	I	P	L	G	G	X	G	E	I	G	K	N	I	T	V	F	R	F	R	D	E	I	F	V	L	D	G	G	L	A	F	P	E	E	G	X	P	G	V	D	L	L	I	P	R	V	D	Y	L	I	E	H	R	H	K	I	K	A	W	V	L	T	H	G	H	E	D	H	I	G	G	L	P	F
Template Known Secondary structure												S	B	S	B	S	S									T	T										B				T	T	S	T	T														T	G	G	G															T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		569	570	.					.	.	.	.	.	.	.	.	580	.																		.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query SS confidence					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Query Sequence		I	L	H	.	.	.	.	I	W	P	M	L	W	I	R	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	W	E	H	H	Q	P	C	V	R	G	E	A	W	Q	W	Q	G	.	L	R	F	S	A	H	W	P	L	Q	G	S	N	D	K	G	N	N	H	S	C	V	V	K	V	D
Query Conservation					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Alig confidence					.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.													.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.
Template Sequence		L	L	P	X	I	F	G	K	E	S	P	V	P	I	Y	G	A	R	L	T	L	G	L	L	R	G	K	L	E	E	F	G	L	R	P	G	A	F	N	L	K	E	I	S	P	D	D	R	I	Q	V	G	R	Y	F	T	L	D	L	F	R	X	T	H	S	I	.	.	.	.	.	P	D	N	S	G	V	V	I	R
Template Known Secondary structure									S				S																			T	T			S	T	T	S							T	T						T	T	T											S	S	.	.	.	.	.	S	S
Template Predicted Secondary structure																																																																				.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.
		627	.	.	630	.	.	.	.	.	.	.	.									.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.					.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.							.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.																								.	.	.	.																		.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.																								.	.	.	.																		.	.	.	.	.	.
Query Sequence		D	G	T	N	S	I	L	L	T	G	D	I	.	.	.	.	.	.	.	.	E	A	P	A	E	Q	K	M	L	S	R	Y	W	Q	Q	V	Q	A	T	L	L	Q	V	.	.	.	.	P	H	H	G	S	N	T	S	S	S	L	P	L	I	Q	R	V	.	.	.	.	.	.	N	G	K	V	A	L	A	S	A	S
Query Conservation														.	.	.	.	.	.	.	.																								.	.	.	.																		.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.																.								.	.	.	.																		.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		T	P	I	G	T	I	V	H	T	G	D	F	K	L	D	P	T	P	I	D	G	K	V	S	H	L	A	K	V	A	Q	A	G	A	E	.	G	V	L	L	L	I	A	D	A	T	N	A	E	R	P	G	Y	T	P	S	E	X	E	I	A	K	E	L	D	R	V	I	G	R	A	P	G	R	V	F	V	T	T	F
Template Known Secondary structure			T	T								S					S	S		T	T	S															.			S							T	T	T	T			S																				S	S
Template Predicted Secondary structure																																					.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y	N	A	W	R	L	P	S	N	K	V	K	H	R	Y	Q	L	Q	G	Y	Q	W	I
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		A	S	H	I	.	.	H	R	I	Q	S	V	I	W	A	A	E	K	Y	G	R	K	V	A
Template Known Secondary structure		T	T			.	.													T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		241	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions